Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq3281 111 2e-19 >seq3281 Length=230080 Score = 111 bits (122), Expect = 2e-19 Identities = 181/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 197022 CAGATCCTCGTCGCTAAAGCCCGTACCGATCTTACAAATGGATTCGTACATCTGGTTGTC 197081 ||| |||||||| || ||||| || |||| ||| || |||| | | || || | || Sbjct 1836 CAGCTCCTCGTCACTGAAGCCAGTTCCGAGCTTGCAGATGGCCTGGAACTCCTCACTCTC 1777 Query 197082 GGGATTGTAACAGGCGAGTAAGAAAGCGCCGTAGGTTCCCGTTCTCTTTCCCACCCCGTT 197141 | ||| |||| || | ||| | ||||| || | | || ||| || Sbjct 1776 CTCGTCGTACGAGGCCAGCAGGAAGCCCCCGTACCGGCCGGCCCGTTTCCCCTTGCCCAG 1717 Query 197142 GAAGCCTCCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTCTT 197201 | || | || || || || || ||||| ||||||| ||| || || | ||| || ||||| Sbjct 1716 GTAGGCACCAATCACTACGAGGTCCAGGGTGTCGCCCACACCCTCGAGGTAGTCCTTCTT 1657 Query 197202 CAGTTTGAGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGGGT 197261 ||| ||||||||| | || |||||||| ||||| ||||| |||| ||||||||||| Sbjct 1656 CAGCTTGAGCCAGTTGTGTGACCTCTTGGCGATCTCCTAGGTGGCGTCCACGTCCAGGGT 1597 Query 197262 CTTGATCATCAATCCCTCGCA 197282 ||| | ||| | |||||||| Sbjct 1596 CTTCACCATAAGCCCCTCGCA 1576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676381151928960