Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1426 168 1e-36 seq1158 136 7e-27 seq1869 93.3 8e-14 seq11 86.0 1e-11 >seq1426 Length=2026957 Score = 168 bits (186), Expect = 1e-36 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| | || ||||| | || | ||| || ||||| ||||||||| ||||||||||| Sbjct 521556 AGCAGTTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 521497 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | || || ||||||| || ||||| || | |||||| |||||| Sbjct 521496 TCCCGGAGGAGGCCGGCAGTGCTGGACAGCCCCGCGTTCTCGGCCTTGAGTGTCTTCACC 521437 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||| ||||| ||||| || ||| ||||| |||||||| |||| Sbjct 521436 TTGTCCTCCAGGCGCGCAATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 521377 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 ||||| || || | ||| || || | |||||||| |||||||| ||||||| ||| || Sbjct 521376 CGGTTTCGCAGCCGCTTGCGCTCTACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGG 521317 Query 241625 GAC 241627 ||| Sbjct 521316 GAC 521314 >seq1158 Length=167444 Score = 136 bits (150), Expect = 7e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 142176 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCTGTGGACGCCAGC 142117 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||||| ||||||||||||||| || |||| |||||| ||||| Sbjct 142116 TCCGTGTTCTGGCTCTTGAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATGCGCTCCAGC 142057 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || | ||| || || ||||| Sbjct 142056 TTGCGCTTGCGGCACTTGGAGGCAGCGATGCGGTTGCGCAGCCGCTTGCGCTCTGCCTTA 141997 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| || || ||||||||||| || ||| Sbjct 141996 ATGCGCTCTTGCGTGTCCATGTCGATGGGCGAC 141964 >seq1869 Length=3970604 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||||||||| | ||||| || | ||||| |||| ||| Sbjct 1059820 TTCACTTTTTCCTCCAGCCGCGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 1059761 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | || |||||||| || |||||| |||||||||| Sbjct 1059760 GCGATGCGGTTCCTCATGCGCTTCCTCTCTGCCTTGATCCGCTCCTGGGACTCCATGTCG 1059701 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 1059700 ATGGGGGAC 1059692 >seq11 Length=524769 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/124 (76%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||| | || || |||||||||||||||||| |||||| |||| |||||| ||| Sbjct 418834 GTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTGG 418775 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 || ||| || || ||||| ||||||||||| || |||| || |||||| ||| Sbjct 418774 TTGCTCTTCCTTTTTACAGGAATCTTTGTAGAGCATATACGGGGTACCTGTCTCTGTCTG 418715 Query 213647 GGAC 213650 ||| Sbjct 418714 AGAC 418711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931053153761280