Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2972 100 5e-16 seq1286 89.7 1e-12 >seq2972 Length=388121 Score = 100 bits (110), Expect = 5e-16 Identities = 100/127 (79%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||||||||||||||| ||||| |||||||| || |||||| |||||| | || |||| Sbjct 372660 TGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCGATATTCT 372719 Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 |||||||| | | | |||| ||||| || || |||||||| || || || ||||| Sbjct 372720 GGCTCAAG-AAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGA 372778 Query 26002 GACGAGG 26008 ||||||| Sbjct 372779 GACGAGG 372785 >seq1286 Length=2059838 Score = 89.7 bits (98), Expect = 1e-12 Identities = 98/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 25880 GGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCT 25939 || |||| |||||||| ||||| || || || || ||| || || ||||| || || | Sbjct 1564751 GGGTGGTGGCCTTTGCCGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTATAT 1564810 Query 25940 TCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGC 25998 ||||||| ||| | ||| |||| |||||| || || |||||||| |||||||||||| Sbjct 1564811 TCTGGCTAAAGAA-AAGAGGACTCATGCCTGGACTCACTTTTTCCAATGAGCTCATCAGC 1564869 Query 25999 AGGGACGA 26006 || || || Sbjct 1564870 AGAGATGA 1564877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928366537812480