Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1033 132 3e-25 seq906 96.9 2e-14 seq626 91.5 1e-12 >seq1033 Length=2538769 Score = 132 bits (146), Expect = 3e-25 Identities = 363/542 (67%), Gaps = 17/542 (3%) Strand=Plus/Plus Query 474386 AAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTT 474445 || || ||||||||||||||||| || || | | |||| || ||| ||||| | ||| Sbjct 1306230 AAGGTGGAAATAATTGCCAATGATCAGGGGACT-GAACCACCCCAAGCTATGTCACCTTT 1306288 Query 474446 ACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT 474505 ||| | || || | ||||| |||||||| || | |||| ||| ||||| Sbjct 1306289 ACTAACACCAGACGATTGATTGGTGATGCTGCAAAGAACCAAGTCGCAATGAATCCCACC 1306348 Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 || || |||||||||| ||| | | ||||| | | ||||||||| | |||||| Sbjct 1306349 AACACGGTTTTTGATGCCAAACAACTTATTGGATGAAGATTTGATGATGCTGTTGTCCAG 1306408 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA 474625 |||| |||| |||||||| || | |||| ||||| || ||| | ||| | | || Sbjct 1306409 TCTGTTATGAAACATTGGCCCTTCATGGTGGCAAATGATGCTGGCAGACCTAAGGTTTAA 1306468 Query 474626 G--CAATACACGCAGGTGAAACTAAACAATTTTCA-CCGGAACAAATTTCTTCAATGGTT 474682 | |||||| | || || || ||| | |||| | || || | || | || ||||| Sbjct 1306469 GTAGAATACAAG--GGAGAGAC-AAAGAGTTTTTATCCAGAGGAGATGCCATCCATGGTC 1306525 Query 474683 TTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGA-AGTAACTGATGCAG 474740 | | || | |||| ||| || || || | ||||| |||| || || | || | Sbjct 1306526 CTGACAAAGAGGAAAGAAATTGCAGAAGTC-TGCCTTGG-GAAGACTGTCACCAACGCTG 1306583 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | | || | || || || |||||||| ||||| ||||| || || |||||||| ||| Sbjct 1306584 TTGTCACAGCGCCTGCCTACTTTAATGACTCTCAGCGTCAGGCTACCAAAGATGCTAGAA 1306643 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 |||| ||||| |||| | | | || | ||||||||| || || || |||| | Sbjct 1306644 CTGTTGCTGGTCTCCATGTACTTAGAACCATCAGTGAACCAACTGCTGCTGCTATTGCCT 1306703 Query 474861 ATGGTCTTG---ATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAG 474917 |||| |||| | ||| || || ||| |||||| | |||||||||| || | Sbjct 1306704 ATGG-CTTGGACAAAAGGGTTGGAGCAGAGA--GAAATGTGCTGATCTTTGATTTAGGTG 1306760 Query 474918 GT 474919 || Sbjct 1306761 GT 1306762 >seq906 Length=1012845 Score = 96.9 bits (106), Expect = 2e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 || || ||||| ||| ||||| | ||| | || || || |||||||| ||| | Sbjct 418742 ACCAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACGGGCATACCTCCTGCCCCCCGT 418801 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || |||||||| |||||||| ||||||||||||||||| ||||| || || |||||| || Sbjct 418802 GGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAATGGCATCCTCAATGTTTCT 418861 Query 476171 GCTTGTGATAA 476181 ||| ||||| Sbjct 418862 GCTGTGGATAA 418872 Score = 91.5 bits (100), Expect = 1e-12 Identities = 218/327 (67%), Gaps = 2/327 (1%) Strand=Plus/Plus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||||||||| ||||||||||| |||| ||||| || || | | | |||| || Sbjct 417752 ACTGCTTGTGAGCGTGCTAAGCGCACTCTCTCTTCCAGCACCCAGGCCAGTATTGAGATT 417811 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 ||||| || | ||||||||| || | |||| |||||| | || ||||||||| Sbjct 417812 GATTCCCTCTATGAAGGAATCGACTTCTATACCTCTATTACCCGTGCCCGATTTGAAGAA 417871 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | |||| | || | || | || || || || ||| || || ||| | Sbjct 417872 TTGAATGCTGACTTGTTCCGTGGCACCCTGGACCCTGTGGAGAAAGCCCTTAGGGATGCC 417931 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 ||||| ||||| || || | ||||| ||||| | || || || ||||| | || || Sbjct 417932 AAACTGGACAAGTCTCAGATTCATGATATTGTCTTGGTTGGTGGCTCAACCCGTATCCCC 417991 Query 475736 AAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAA 475794 || || ||||| | || | | || || || ||| | | ||| | || | || Sbjct 417992 AAGAT-TCAGAAACTTCTCCAGGACTTCTTCAACGGGAAAGAACTGAATAAGAGCATCAA 418050 Query 475795 TCCTGATGAAGCTGTTGCATATGGAGC 475821 |||||||| |||||||||||||| || Sbjct 418051 CCCTGATGAGGCTGTTGCATATGGTGC 418077 Score = 89.7 bits (98), Expect = 3e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || || || || ||||||||||| ||||| ||||| || || |||||||| |||| ||| Sbjct 417309 ACAGTACCTGCCTATTTTAATGACTCTCAGCGTCAGGCTACCAAAGATGCTGGAACTATT 417368 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 || ||||| || || | || || || ||||| ||||| || || || |||| ||||| Sbjct 417369 GCTGGTCTCAACGTACTTCGAATCATCAATGAGCCAACTGCTGCTGCTATTGCCTATGG 417427 >seq626 Length=3061481 Score = 91.5 bits (100), Expect = 1e-12 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || ||| ||||||| ||||||| ||||||||||| |||||| | ||||| || ||||| Sbjct 1018720 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 1018779 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACC 474840 |||||||| |||| ||||| || || ||||| | | || || ||||| || Sbjct 1018780 AAAGATGCTGGAACTATTGCTGGACTGAATGTCATGAGGATCATCAATGAGCC 1018832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266412275256416