Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq614 365 5e-96 seq640 239 5e-58 seq1875 167 3e-36 seq616 98.7 1e-15 >seq614 Length=2911860 Score = 365 bits (404), Expect = 5e-96 Identities = 680/986 (69%), Gaps = 13/986 (1%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| ||||||| ||| |||| ||| || | ||||| ||| ||||||||| || || Sbjct 1054334 CAGATGCTCGTCCAAACACTGGATGGCAAAGAGGTCAATGTCCGTGTCGAATTTGTTGGC 1054275 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| ||| | || ||||| || ||| || | ||||| ||||| || Sbjct 1054274 AAACAAGTGGTGCACGTGCAACAG---CCAGTTCAAGTCACCAGCTCCGAAAACGCACAC 1054218 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | ||| |||||| |||| |||||||| | || || || | ||||| ||||| Sbjct 1054217 AGAGCGAACGTGGACGCCGCTGCACGGCGGGTAGGGGGCGCCCTTGGAAACGTCTCCTTC 1054158 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 |||||||||| || ||||||||||| ||||| |||||||| || ||||| || || || Sbjct 1054157 AAAGTACTGCCATTTAACAAACCTGGCAATCGCTTGCATGTCAGACGTGTCATACTTATA 1054098 Query 160292 -CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTT 160350 | | ||| || | | | |||| | |||| || | ||| | |||||||| || | | Sbjct 1054097 GCTTAAGGACAATGACCCTGGGA-CTTCGGGGATCCTCTGAATAGTGGCCCAGAGATACT 1054039 Query 160351 CGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCA 160410 |||| |||||||| ||||| || | ||| ||||| |||| | || || | | | Sbjct 1054038 CGTCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGTATATTTTGGTTCTGGA 1053979 Query 160411 GAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTA 160470 | |||| || || || | || ||||| || || ||||| || || | ||| Sbjct 1053978 GCACGTACTCCACATATTCCCTACTGACCACAAAATAGGCACTGCCTGAAAACAGAGGTG 1053919 Query 160471 TGGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGC 160529 | | ||| || ||| ||| ||| || |||| | || | ||| ||||| | Sbjct 1053918 TTTCAAGAGGTGGA-TGTATTTTGTCAGTCCCCATGTTTGTCAGCTTTCCATTCACGACT 1053860 Query 160530 GCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTG 160589 | | |||| |||||||| | |||| || | |||||| || || ||||| || Sbjct 1053859 TCATAATGCTTTTTCCACCTTTCTTTCTTATGGGATGGCATTTTCTCTGTTTCTAGGTTG 1053800 Query 160590 TTGGCACCG-TCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAA 160648 || | || || | | || |||| | |||| || || ||||| || || | ||||| Sbjct 1053799 TTCTCGCCCATCAATAGCTTG-AGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAA 1053741 Query 160649 GTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCT 160708 || ||||||| | ||||||| ||||||||| || ||| | || |||||| Sbjct 1053740 ATCCATACCGCAGAGATTTATCAGGTACTTCCAGCCTGCATTCATCTGGTAGAGGTCCTG 1053681 Query 160709 CATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTT 160768 |||||| |||| || ||||| || ||||||||||| || ||||| ||| |||| || | Sbjct 1053680 CATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGACGCATACACCACGCTCTCCAGCTG 1053621 Query 160769 ACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG--AAAGAAC 160826 |||||| |||||||| ||| ||| || || ||| | ||| || | ||| ||| | Sbjct 1053620 ACTGGCGACAAAGACATTACTGAAGCAGGATGCGA-TGCCAACAGCTGCAGCCAAAAAGG 1053562 Query 160827 ATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCC 160886 || || || | ||| |||||||| | ||||| | ||||||||| ||||||||| Sbjct 1053561 AT-TTCTCTGATTTTGCATCCACGTGAATACAATAGAAATTCTGAGGCATATAGATGGCC 1053503 Query 160887 CTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGA 160946 || || | ||| || | ||| || || || ||||| | ||| ||||| || ||||| ||| Sbjct 1053502 CTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATAGAATATGCTATTGGA 1053443 Query 160947 AACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAA 161006 || | | ||| || ||| || | | || | ||||| ||| |||| || ||| || Sbjct 1053442 AATCCCGCCTCTTCTTTACTAAGTGGTTCTGTAATATACTTGCGCTTCTTAATGAAAGAA 1053383 Query 161007 TCACAATCCCGCGTCATGTTGATATA 161032 ||||||| | |||||||| || || Sbjct 1053382 GCACAATCACCAGTCATGTTTATGTA 1053357 >seq640 Length=1279041 Score = 239 bits (264), Expect = 5e-58 Identities = 408/587 (70%), Gaps = 11/587 (2%) Strand=Plus/Plus Query 167884 TTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTC 167943 ||| | ||| ||| || ||||| |||| ||||| |||| ||| ||||| || || | Sbjct 1126350 TTTCCTGTA-GTCGGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCC---TTCC 1126405 Query 167944 CTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGC 168003 | || || |||| || ||||| | || | ||||| || ||| ||| ||||||||| Sbjct 1126406 CCACCTGTGTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGATGTTGTTCCATTGG 1126465 Query 168004 GATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTA 168063 | ||| | ||| | | || ||||||||||||||||| || ||||||||| | || | Sbjct 1126466 GGTGTGACACGATCTCGGTACTGTTCTCAATCCCTGACCCAAAGACCTTCCAGGAGATCA 1126525 Query 168064 CAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTAAGCCATTGGTAAAAGACTCGA 168123 ||| || || | || | |||||||| || |||||| | || | | | | | | Sbjct 1126526 TAGGGGCTGGGCAAGCATTGGCAGAGCAAGTGGTATTTAGGTGATCT-TCAGATAGTTTA 1126584 Query 168124 T-GTGAAGCGATACGGTAGGTGGGACGTATAGAGTCAAGCACGTTTTTCCAGAAATCTTG 168182 | |||||| |||| || || | | ||||| | ||| | | |||| || ||||| Sbjct 1126585 TAGTGAAGGAATACTGTGGG-----CAAAGAGAGTGAGGCAGGCTATTCCTGAGATCTTT 1126639 Query 168183 CCTGATCCGAACGTGTTGAAGAGGCACATGAAGCAGCCTTCGTCCTCCACGGTGGTATTC 168242 || || || || || || ||||||||| || | || | || || |||| |||||||||| Sbjct 1126640 CCAGAACCAAAGGTATTAAAGAGGCACTTGTAACACGCCTCATCTTCCAAGGTGGTATTC 1126699 Query 168243 CAAAATGTTAGCGTTGAGTTTCGGAGGCCCAACTGCGTTATGTTCACACGATCTTTATAA 168302 || || || | |||||||| ||| |||| ||| || ||||| | || || || Sbjct 1126700 CAGAAGGTAATGGTTGAGTTCATGAGTCCCAGCTGGGTGATGTTTATCTTGTCCTTGTAG 1126759 Query 168303 GGAGGTTGAACTACAACGCCGTGGTTCTCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTG 168362 | ||| || |||||||| || |||||||||||| ||||| |||||| || ||||| Sbjct 1126760 GCAGGCTGGACTACAACCCCATGGTTCTCGCTGTAGGTGATCATGTTTTCTGGGCTTACA 1126819 Query 168363 GCCTTTATCTTCTGCCAGGTTACTATCAGAACCTCTTTATCGGTCTGCAGGGAACATCTC 168422 ||||| || || ||||| || || |||| ||| || | | | ||| || ||||| Sbjct 1126820 GCCTTGATTTTTTGCCATGTCACAATCAAAACTTCCTGGGGATTTTTCAGAGAGCATCTT 1126879 Query 168423 AGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTCATCTTGAGTTACGAC 168469 | ||||| || ||||||||||| ||| |||| || || || || Sbjct 1126880 AAAGAAGCAGGTGTGTTCAGCAGCCCTCTTACATCCTGGGTCACCAC 1126926 >seq1875 Length=1247885 Score = 167 bits (184), Expect = 3e-36 Identities = 227/317 (72%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 ||||| | ||| | | |||| || ||||| || || || || || || ||||||||| || Sbjct 1111215 AGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGCACTTG 1111274 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || | || || |||| |||||||||||| || || | |||||||| ||| ||| Sbjct 1111275 TAACACGCCTCATCTTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGAGTCCC 1111334 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | ||| || ||||| | || || || | ||| || |||||||| |||||||||||| Sbjct 1111335 AGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCGTGGTTCTCG 1111394 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 ||| ||||| |||||| || ||||| ||||| || || ||||| || || |||| | Sbjct 1111395 CTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAATCAAA 1111454 Query 168393 ACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGC 168452 || || | | | ||| || ||||| | ||||| || ||||||||||| ||| Sbjct 1111455 ACTTCCTGGGGATTTTTCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGCCCTCTT 1111514 Query 168453 TCATCTTGAGTTACGAC 168469 |||| || || || || Sbjct 1111515 ACATCCTGGGTCACCAC 1111531 Score = 105 bits (116), Expect = 8e-18 Identities = 158/221 (71%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 167883 GTTTGCC-GTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTT 167941 |||| || ||| ||| || ||||| |||| ||||| |||| ||| ||||| || || Sbjct 1108545 GTTTCCCTGTA-GTCGGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCC---TT 1108600 Query 167942 TCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATT 168001 || || || |||| || ||||| | || | ||||| || ||| ||| |||||||| Sbjct 1108601 CCCCACCTGTGTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGATGTTGTTCCATT 1108660 Query 168002 GCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATAT 168061 | | ||| | ||| | | || ||||||||||||||||| || ||||||||| | || Sbjct 1108661 GGGGTGTGACACGATCTCGGTACTGTTCTCAATCCCTGACCCAAAGACCTTCCAGGAGAT 1108720 Query 168062 TACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 | ||| || || | || | |||||||| || |||||| Sbjct 1108721 CATAGGGGCTGGGCAAGCATTGGCAGAGCAAGTGGTATTTA 1108761 >seq616 Length=1899178 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 176182 TCCATTGAAAGTATGTGTTGTAGATTGTGTTGTTTGTATCTAGTATATGTAGATATTTTA 176241 |||| | |||||| | ||| | | | |||||| | |||| | | ||||| || Sbjct 1113047 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTGTCTACTTCCTTCAGATACTTAG 1113106 Query 176242 CTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGT 176301 |||| |||| || |||| |||||| | ||||| || |||| | || |||||| || | Sbjct 1113107 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 1113166 Query 176302 TTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGC 176361 | ||||| |||| || || || || ||||| | || || | | || | || | Sbjct 1113167 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCAT 1113226 Query 176362 GGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACT 176421 ||||| |||||||| |||||| || |||| |||||||||||||| | | ||| || | Sbjct 1113227 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 1113286 Query 176422 TACA 176425 | || Sbjct 1113287 TGCA 1113290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576921989833920