Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1227 102 2e-16 seq812 93.3 8e-14 seq1484 91.5 3e-13 seq601 87.8 4e-12 seq347 87.8 4e-12 >seq1227 Length=586938 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || || | || | || | ||| | ||| || ||| || || ||| Sbjct 15376 ATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCA 15435 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| ||||| || |||||||| || ||||| || || || Sbjct 15436 GACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGG 15495 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| |||||||| || || ||||| || | || | || Sbjct 15496 GGGATGCCTTCTTTTTCTTGTATCTTCCCCTTGACATTCTCGATGGTGTCACTGGGCTCC 15555 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || ||||| |||||||||||||| | || || | ||| ||||||||| Sbjct 15556 ACCTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCATT 15606 >seq812 Length=3055148 Score = 93.3 bits (102), Expect = 8e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 192328 ACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATC 192386 |||| ||| | ||| | ||| ||| || || || || ||||| || || || |||| | Sbjct 659705 ACTAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGACAAAGTATGTCCATCTTT 659763 Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 || ||| || ||||||||||| | ||| || || ||||| || |||| ||| |||| || Sbjct 659764 CAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCTTTCCTTATTCTG 659823 Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506 || || |||||||| ||| | |||||| | || || || ||||| ||| | || Sbjct 659824 GATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCGACCTCGAGAGTGATGATGTT 659883 Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||| || || | || |||||||| || Sbjct 659884 CCCTATTAGAGTCTTCACGAAAATCTGCATCTT 659916 >seq1484 Length=2418587 Score = 91.5 bits (100), Expect = 3e-13 Identities = 159/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 192311 CACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATA 192370 |||| | ||| | || |||| ||| | ||| | ||| || || || || ||||| | Sbjct 499485 CACCACGAAGTCTCAACACTAGATGAAGAGTCGACTCCTTTTGCATGTTGTAGTCAGACA 499544 Query 192371 ATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTA 192430 | || | | |||| |||| ||| || ||||||||||| | ||| || || ||||| || | Sbjct 499545 AAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAA 499604 Query 192431 TTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTT 192490 ||||||| ||||| || || || |||||||| || | ||| || | || || | Sbjct 499605 TTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTACTGTATCCGAGGGCTCAACCT 499664 Query 192491 C-TAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | ||||| ||||| || || | || || || || |||||||| || Sbjct 499665 CGAAGAGTGATGGTCTTCCCCATCCGGGTCTTCATGAAAATCTGCATCTT 499714 >seq601 Length=205583 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/202 (71%), Gaps = 3/202 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| || || || | ||| ||||| | ||| ||| || || || || |||| Sbjct 193181 ACCACCACGAAGTCGCAACACAAGATGAAAAGTGGACTCCTTTTGA-ATGTTGTAGTCAG 193123 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || | | |||| | || ||| || ||||||||||| | ||| | || ||||| | Sbjct 193122 ACAAAGTACATCCATCTTTCAGTTGCTTGCCAGCAAAGATCAGTCTTTTCTGGTCAGGAG 193063 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || | || |||||||| ||| | ||| || | || | Sbjct 193062 GAATTCCTTCCTTATCCTGGACCTTGACCTTTACATTTTCTATGGTATCCGAGGGCTCGA 193003 Query 192488 CTTCTAGAGTAATGGTTTTACC 192509 | | ||||| ||||| || || Sbjct 193002 CCT-GAGAGTGATGGTCTTCCC 192982 >seq347 Length=1818929 Score = 87.8 bits (96), Expect = 4e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 ||||| || || | | |||| |||| ||| || ||||||||||| | ||| || || ||| Sbjct 1569243 TCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCA 1569302 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || || |||||||| ||||| || || || |||||||| | | | |||||| | Sbjct 1569303 GGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCTGAGGGC 1569362 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || | | ||| ||||| || | || | || || || || |||||||| || Sbjct 1569363 TCCACCTTGACAGTGATGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCATCTT 1569418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983960418529200