Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq339 89.7 2e-12 >seq339 Length=243091 Score = 89.7 bits (98), Expect = 2e-12 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 ||||||| || || || |||||||| || || || || |||| || ||||| ||||| Sbjct 12467 ACCAGTTTCAGCAGTCTTGACAGCTGTGTCGATCAGCCCCTCACGGCCCCCCATGGCATG 12526 Query 302667 GAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCG 302725 |||||| | ||| || ||| || || | | ||||| |||| || || || || Sbjct 12527 GAAGAAGAACTC-AGTGGGCGTGAGGCCGGCCAGGTAGGAGTTCTCCACAAAGCCTCGGC 12585 Query 302726 CCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATG 302785 ||| ||| || ||| ||| | ||||| |||||||||| || || | || ||| Sbjct 12586 TCTCAGGCCCATAGTCATCTTTGATGAAGTGAGGCAGGGTCCGGTGCTTGAATCCAAATG 12645 Query 302786 GGATACGCTTTCCATCAACGTTCTGCTGTCC 302816 |||| ||||| || || || |||||||| || Sbjct 12646 GGATCCGCTTGCCCTCCACATTCTGCTGCCC 12676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471040815145704