Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq170 149 6e-31 >seq170 Length=2393328 Score = 149 bits (164), Expect = 6e-31 Identities = 703/1107 (64%), Gaps = 55/1107 (5%) Strand=Plus/Plus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||| | ||| || || | | | ||| || ||| |||| | |||||| | || | Sbjct 2163039 ATGCCTTCTATGTTGCGGACCTGGAATACATTCTGAAGAAACATCTGAGATGGTTGAAAG 2163098 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGAGAGAGTCCTC 20323 || | ||| |||| || ||||| || || || | | || | || | || | Sbjct 2163099 CTCTTCCTCTGGTCACCCCCTTTTATGCAGTCAAATGCAATGATAGCAGA-ACCGTAGTG 2163157 Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 ||||| || |||||| || || || |||||||||| ||| ||| || || || || Sbjct 2163158 AAGACACTCGCTGCCATTGGGACAGGATTTGACTGTGTCAGCAAGACTGAAATACAATTG 2163217 Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443 |||| | ||| || || | | |||| | ||| | | ||| ||||| ||||| || Sbjct 2163218 GTGCAGAGTCTCGGGGTGCCCCCAGAGAAGATTATCTATGCAAATCCATGTAAACAAGTG 2163277 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503 || || || | |||||| || | | |||| | ||||||||||||||||||||| Sbjct 2163278 TCTCAGATTAAGTATGCTGCCAATAACAGAGTCCAGATGATGACTTTTGATAGTGAAGTT 2163337 Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563 ||||| | ||| ||| | || | | || ||| |||| || |||| | Sbjct 2163338 GAGCTGATGAAAGTTGCCAGGGCACATCCAAAGGCCAAGTTGGTTTTGCGGATCACCACT 2163397 Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGC 20623 ||||| || || ||| | | | ||||| || ||||| || || | || | Sbjct 2163398 GATGATTCCAAAGCAGTCTGTCGCTTCAGTGTTAAATTTGGTGCCACTCTCAAAAAAAAA 2163457 Query 20624 CAA-------CG-CCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCA 20675 || || ||| | ||| ||| ||| | |||| | || || || || |||| Sbjct 2163458 AAAGCTCTTTCGCCCTTTTGGAACGGGCGAAAGAGCTAGGTATTGATGTCATTGGTGTCA 2163517 Query 20676 GCTTCCACGTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGG 20735 ||||||||||||| |||||||| | ||| | || | | | ||||| |||| | Sbjct 2163518 GCTTCCACGTGGGAAGTGGCTGTACTGATCCTGAGACCTTTGTGCAGGCCATCTCTGATG 2163577 Query 20736 CCAGGAGAGCTTTTGACTTTGGCACGCTGA--TGGGCTTTGACATGTACCTCTTGGATAT 20793 || | | | |||||| | || |||||| | || || ||||||| || | || || Sbjct 2163578 CCCGCTGTGTCTTTGACATGGG--CGCTGAGGTTGGTTTCAACATGTATCTGCTTGAAAT 2163635 Query 20794 TGGTGGCGGCTTTCCCGGGATCAATGAGATTGAGCCAACTTTTGAGGACATTGCAGAAGT 20853 |||||| |||||||| || | | || | ||| | ||||| || || | | || Sbjct 2163636 TGGTGGTGGCTTTCCTGGATCCGAGGATGTAAAGCTTAAATTTGAAGAGATCACCAATGT 2163695 Query 20854 CATTAACGCGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTATTGGTGA 20913 || ||| | || |||| | | |||||||| || | || ||| || | ||| Sbjct 2163696 AATCAACCCAGCACTGGACAAGTATTTTCCATCAGACTCTGGAGCGAGAATCATAGCTGA 2163755 Query 20914 ACCTGGCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTAAAAA 20973 |||||||| ||||| | | | || || | || | || || | | | ||||| ||||| Sbjct 2163756 GCCTGGCAGATACTATGTTGCATCAGCTTTCACGCTCGCAGTTAATATCATTGCCAAAAA 2163815 Query 20974 --GTGTGTTGAAG--ACA-----CTCCTGGAGATAAAAAG------------------TT 21006 ||| || ||| ||| | ||| || || || || Sbjct 2163816 ACTTGTATTAAAGGAACAGACAGGTTCTGATGACGAAGAGGAGTCAAGTGAATGGACATT 2163875 Query 21007 TATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTA--ACCAT 21064 ||||||||| || || ||||| || ||||| || ||||| ||| |||| | ||| Sbjct 2163876 TATGTATTACGTGAACGATGGAGTATATGGGTCATTCAACTG--TATCCTTTACGATCAT 2163933 Query 21065 GCTCGTCCTATGCCTATGCTGCTTAA-AGA---AAAACGCCTTGAAGACAAAGACTATGT 21120 || | | |||| | |||| || ||| ||| | || || || | ||| Sbjct 2163934 GCACACGTGAAGCCTCTTCTGCAGAAGAGACCCAAATC----AGATGAGAAGTATTATTC 2163989 Query 21121 TTCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACT 21180 || ||||| ||||| || | ||| || ||| | || |||||||| |||| ||| | || Sbjct 2163990 ATCCAGCATCTGGGGACCGACCTGTGACGGCCTGGACCGCATTGTTGAGCGCTGTAACCT 2164049 Query 21181 GCCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGT 21240 ||| ||| | || ||||| || ||| | | ||||| |||||||| | ||||| || Sbjct 2164050 GCCCGAGATGCATGTGGGTGATTGGATGCTCTTTGAGAACATGGGTGATTACA-CTGTTG 2164108 Query 21241 CAGCT-CTTCAACCTTTAACGGCTTCC 21266 | ||| |||| ||||| || || |||| Sbjct 2164109 CTGCTGCTTCTACCTTCAATGGATTCC 2164135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463306920370560