Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1227 159 7e-34 seq4133 154 3e-32 seq3059 154 3e-32 seq87 152 1e-31 seq1484 132 9e-26 seq347 123 5e-23 seq812 120 6e-22 seq833 113 9e-20 seq601 113 9e-20 seq2282 102 2e-16 seq2985 100 6e-16 >seq1227 Length=586938 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| || || ||||| || ||||||||||| || |||||||| || || || ||||| Sbjct 12870 ACCTCCCCTTAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 12929 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || ||||| || ||||| || |||||||| || || || || ||||| || Sbjct 12930 CAGGGTGCGGCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 12989 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || || || ||||| ||||| || || || || || || || ||| | || || || Sbjct 12990 GATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 13049 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| ||||| ||||| || || |||||||| Sbjct 13050 CTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 13097 >seq4133 Length=1091651 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||| || || | |||||| || || |||||||| || || |||||||| Sbjct 881312 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 881253 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || || || || |||||||| || || || || || || || Sbjct 881252 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 881193 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| || || || || ||||| || ||| |||| || || Sbjct 881192 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTAGGCTCCACC 881133 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| || || ||||||| |||| ||||| || || ||||||||| Sbjct 881132 TCCAGGGTGATGGTCTTGCGGGTCAGGGTCTTCACGAAGATCTGCATT 881085 >seq3059 Length=469066 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||| || || | ||||||||| || |||||||| || || |||||||| Sbjct 20095 CCACCCCTCAGACGAAGGACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAATCAGAA 20154 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || || || || |||||||| || || || || || || || Sbjct 20155 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 20214 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| || || || || || || || ||| | || || || Sbjct 20215 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 20274 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| || || |||||||| |||| ||||| || || ||||||||| Sbjct 20275 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATT 20322 >seq87 Length=1745107 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||| || || | |||||| || || |||||||| || || |||||||| Sbjct 605641 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 605700 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || || || || |||||||| || || || || || || || Sbjct 605701 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 605760 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| || || || || || || || ||| | || || ||| Sbjct 605761 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACT 605820 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| |||| ||||| || || |||||||| Sbjct 605821 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 605867 >seq1484 Length=2418587 Score = 132 bits (146), Expect = 9e-26 Identities = 156/210 (74%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||| || ||||| || || || || || || || ||||| | | | | || ||||| Sbjct 499502 ACTAGATGAAGAGTCGACTCCTTTTGCATGTTGTAGTCAGACAAAGTACATCCATCTTCC 499561 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 ||||| || ||||||||||| |||||||| || || ||||| |||||||||||||| || Sbjct 499562 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 499621 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAA-AGTTATCGTCTT 82780 ||||| || ||||||||||| | ||||| || || || || || ||| || ||||| Sbjct 499622 ATCTTGGCCTTTACATTTTCTACTGTATCCGAGGGCTCAACCTCGAAGAGTGATGGTCTT 499681 Query 82781 GCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || ||||| | || |||||||| Sbjct 499682 CCCCATCCGGGTCTTCATGAAAATCTGCAT 499711 >seq347 Length=1818929 Score = 123 bits (136), Expect = 5e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| ||||| || ||||||||||| |||||||| || || ||||| ||||||||| Sbjct 1569258 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 1569317 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 ||||| || ||||| || ||||||||||| | ||||| || || || | | ||| Sbjct 1569318 TTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCTGAGGGCTCCACCTTGACAGTG 1569377 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| |||||| ||||| | || |||||||| Sbjct 1569378 ATGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCAT 1569415 >seq812 Length=3055148 Score = 120 bits (132), Expect = 6e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||| || ||||| || || || || || || || ||||| | | | || |||| Sbjct 659705 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTTC 659764 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 ||||| || ||||||||||| |||||||| || || ||||| |||| |||||||| || Sbjct 659765 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCTTTCCTTATTCTGG 659824 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| || ||||||||||| || ||||| || || || || | ||| || | || Sbjct 659825 ATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCGACCTCGAGAGTGATGATGTTC 659884 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| | | ||||| || || |||||||| Sbjct 659885 CCTATTAGAGTCTTCACGAAAATCTGCAT 659913 >seq833 Length=293620 Score = 113 bits (124), Expect = 9e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||| |||||||||||| || || || || || ||||||||||| || || ||| Sbjct 240199 TGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 240258 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || || || || || |||| | ||||| |||||||| | ||| |||||||| || Sbjct 240259 AAGAAAAACAACCAAGTCTCTTTTCTTCACGTGTATCATCACTGTACCATGTTTACGTTG 240318 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 | ||| | || ||||| ||| |||| ||||| || Sbjct 240319 TGGTGGATTGGAATTAAGTGGGTTGCAGGAGGACA 240353 >seq601 Length=205583 Score = 113 bits (124), Expect = 9e-20 Identities = 144/197 (73%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 82613 AGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCC 82672 ||| || || || || || || || ||||| | | | | || |||| ||||| || || Sbjct 193151 AGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTTCAGTTGCTTGCC 193092 Query 82673 AGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTT 82732 ||||||||| ||||||| || || ||||| |||||||||||||| || | ||| | || Sbjct 193091 AGCAAAGATCAGTCTTTTCTGGTCAGGAGGAATTCCTTCCTTATCCTGGACCTTGACCTT 193032 Query 82733 TACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGT 82792 ||||||||| || ||||| || || || | | ||| || ||||| || ||| ||| Sbjct 193031 TACATTTTCTATGGTATCCGAGGGCTCGACCT-GAGAGTGATGGTCTTCCCCATCAGCGT 192973 Query 82793 CTTTACAAATATCTGCA 82809 || || || ||||||| Sbjct 192972 CTCCACGAAAATCTGCA 192956 >seq2282 Length=2065108 Score = 102 bits (112), Expect = 2e-16 Identities = 161/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| ||||| |||| || ||||||||||| || || |||| || || || ||||| Sbjct 854489 CCTCCCCTCAAGTGCAGGACCAAGTGCAGAGTGGA--CTCTCTGGATGTTGTATTCAGAC 854432 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || ||||| || |||||| | || || || || ||| | || Sbjct 854431 AGGGTGCACCCATCTTC-AGCTGTTTCCCTGCAAAGGTCAGCCTCTGCTGGTCTAGGGGG 854373 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || || ||||||||| | || || ||||| || || | |||| | || || || Sbjct 854372 ATGCCCTCTTTGTCTTGAATCCTGGCCTTGACATTCTCGATGGGATCACTGGGCTCCACC 854313 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | | ||||| ||| | ||||| | || |||||||| Sbjct 854312 TCCAGGGGGTTGGTCTT-ATGGTCTAGGTCTTCATGAAGATCTGCAT 854267 >seq2985 Length=258859 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||| ||| || || | |||||| || || |||||||| || || ||||||| Sbjct 227362 TACCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAG 227303 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| || || || || |||||||| || || || || || || | Sbjct 227302 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGG 227243 Query 82702 GTATTCCTTCCTTATCTTGAATC 82724 | || ||||||||||| || ||| Sbjct 227242 GAATGCCTTCCTTATCCTGGATC 227220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981309018604088