Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq640 282 5e-71 seq614 271 9e-68 seq1875 206 3e-48 >seq640 Length=1279041 Score = 282 bits (312), Expect = 5e-71 Identities = 417/590 (71%), Gaps = 8/590 (1%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 ||||||| ||| ||| || |||||||||| ||||| || | ||| ||||| |||| Sbjct 1126345 ACAGTTTTCCTGTAGTCGGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCCT-- 1126402 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| || | || || ||||| | || || ||||| || |||||||| || || Sbjct 1126403 -TCCCCACCTGTGTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGATGTTGTTCCA 1126461 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 || | ||| ||| | | ||||| || || || || || || || ||||| | Sbjct 1126462 TTGGGGTGTGACACGATCTCGGTACTGTTCTCAATCCCTGACCCAAAGACCTTCCAGGAG 1126521 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742 || | ||| ||||| | |||| | ||||||||||| | |||| |||||| | | Sbjct 1126522 ATCATAGGGGCTGGGCAAGCATTGGCAGAGCAAGTGGTATTTAGGTGATCTTCAGATAGT 1126581 Query 171743 TCATAGTGTAATGACACAGTAGGTGGAACATAGAGTGTCAGACAGGTCTTACCCGATATT 171802 | |||||| | | || || || || |||| || || |||| | || || || Sbjct 1126582 TTATAGTGAAGGAATACTGTGGG-----CAAAGAGAGTGAGGCAGGCTATTCCTGAGATC 1126636 Query 171803 TTTCCGGACCCAAAAGTATTAAACAAACACATAAAACAGCCTTCGTCCTCCACGGTGGTG 171862 ||||| || ||||| |||||||| | ||| | |||| | || || |||| |||||| Sbjct 1126637 TTTCCAGAACCAAAGGTATTAAAGAGGCACTTGTAACACGCCTCATCTTCCAAGGTGGTA 1126696 Query 171863 TTCCAAAAAGTCAATGTAGAATTTCTGAGTCCGAGTTGCGTAATGTTCACCCGGTCCTTG 171922 ||||| || || | || || || ||||||| || || || ||||| | | ||||||| Sbjct 1126697 TTCCAGAAGGTAATGGTTGAGTTCATGAGTCCCAGCTGGGTGATGTTTATCTTGTCCTTG 1126756 Query 171923 TACGGAGGCTGGACGACAACACCGTGATTCTCGCTGAACGTGGCCATGTTTTCGGGGCTC 171982 || | ||||||||| ||||| || || ||||||||| | ||| ||||||||| ||||| Sbjct 1126757 TAGGCAGGCTGGACTACAACCCCATGGTTCTCGCTGTAGGTGATCATGTTTTCTGGGCTT 1126816 Query 171983 GTAGCCTTTATCTTCTGCCACGTTACTATTAAAACTTCTTTGTCGGTTTGAAGAGAGCAT 172042 |||||| || || ||||| || || || |||||||| | | ||| ||||||||| Sbjct 1126817 ACAGCCTTGATTTTTTGCCATGTCACAATCAAAACTTCCTGGGGATTTTTCAGAGAGCAT 1126876 Query 172043 CTTAAAGAAGCAGGTGTGTTCAATAATTCCCTTTCGTCTTGCGTTACCAC 172092 |||||||||||||||||||||| | | ||| | || || || ||||| Sbjct 1126877 CTTAAAGAAGCAGGTGTGTTCAGCAGCCCTCTTACATCCTGGGTCACCAC 1126926 >seq614 Length=2911860 Score = 271 bits (300), Expect = 9e-68 Identities = 663/1001 (66%), Gaps = 9/1001 (1%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| |||||| | |||||||| || || | ||| ||| Sbjct 1054350 CCAGGGCTTTATGCCTCAGATGCTCGTCCAAACACTGGATGGCAAAGAGGTCAATGTCCG 1054291 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 ||||| ||||| || |||| ||| ||| || | || | ||| || | || || | Sbjct 1054290 TGTCGAATTTGTTGGCAAACAAGTGGTGCACGTGC---AACAGCCAGTTCAAGTCACCAG 1054234 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| |||||||| || || ||||| ||||||||||||||||| || |||| || | Sbjct 1054233 CTCCGAAAACGCACACAGAGCGAACGTGGACGCCGCTGCACGGCGGGTAGGGGGCGCCCT 1054174 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | || || || || |||| ||||| ||||| ||||| | || || |||||||| | Sbjct 1054173 TGGAAACGTCTCCTTCAAAGTACTGCCATTTAACAAACCTGGCAATCGCTTGCATGTCAG 1054114 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | ||||| ||||| || | | | || | || || || | || | ||||| | || Sbjct 1054113 ACGTGTCATACTTATAGCTTAAGGACAATGACCCTGGGACTTCGGGGATCCTCTGAATAG 1054054 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | |||||||| || || || || || | ||||||||| |||| | Sbjct 1054053 TGGCCCAGAGATACTCGTCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGTA 1053994 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| | | || | ||| || || ||| | || | ||| || || || | Sbjct 1053993 TATTTTGGTTCTGGAGCACGTACTCCACATATTCCCTACTGACCACAAAATAGGCACTGC 1053934 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||||| ||| | | ||| || | |||||| ||| |||| | | Sbjct 1053933 CTGAAAACAGAGGTGTTTCAAGAGGTGGATGTATTTTGTCAGTCCCCATGTTTGTCAGCT 1053874 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTT 162598 |||| | ||||| | | ||| ||||||| | ||||| || | | | | Sbjct 1053873 TTCCATTCACGACTTCATAATGCTTTTTCCACCTTTCTTTCTTATGGGATGGCATTTTCT 1053814 Query 162599 CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGG 162658 | || ||||| |||| ||| ||| ||| |||| | || || || || |||| Sbjct 1053813 CTGTTTCTAGGTTGTTCTCGCCCATCAATAGCTTGAGCTTCCTGACAATTTCCAGGTTGG 1053754 Query 162659 TCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTC 162718 | |||| ||||| || | ||||||||||| || | || ||||| | | | Sbjct 1053753 TTTTAATAGGAAAATCCATACCGCAGAGATTTATCAGGTACTTCCAGCCTGCATTCATCT 1053694 Query 162719 CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGA 162778 ||| || ||||| | ||||| || || ||||| || || ||||| ||||| ||||| | Sbjct 1053693 GGTAGAGGTCCTGCATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGACGCATACACCA 1053634 Query 162779 CGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCC--CATC-A 162835 ||||||||| | | |||||||||||||||| ||| || || | || || || | Sbjct 1053633 CGCTCTCCAGCTGACTGGCGACAAAGACATTACTGAAGCAGGATGCGATGCCAACAGCTG 1053574 Query 162836 CGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAG 162895 | |||| || | || || | ||| ||| ||||| | || || | |||||||| Sbjct 1053573 CAGCCAAAAAGGATTTC---TCTGATTTTGCATCCACGTGAATACAATAGAAATTCTGAG 1053517 Query 162896 GGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAG 162955 | |||||||||||||| | || || | ||| || || || || || ||||| |||| Sbjct 1053516 GCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATAG 1053457 Query 162956 AATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGCGGT 163015 |||| ||||| || || | ||||| || ||| || | |||||| |||||||| | Sbjct 1053456 AATATGCTATTGGAAATCCCGCCTCTTCTTTACTAAGTGGTTCTGTAATATACTTGCGCT 1053397 Query 163016 CCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056 | | | || | ||||| || | |||||||| | |||| Sbjct 1053396 TCTTAATGAAAGAAGCACAATCACCAGTCATGTTTATGTAG 1053356 >seq1875 Length=1247885 Score = 206 bits (228), Expect = 3e-48 Identities = 239/322 (74%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || || || ||||| || ||||| |||||||| | | Sbjct 1111210 CAAAGAGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGC 1111269 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| | || || |||| |||||| ||||| || || | || || || ||| Sbjct 1111270 ACTTGTAACACGCCTCATCTTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGA 1111329 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || || ||||| | | ||||||||| | ||||||||| ||||| ||||| | Sbjct 1111330 GTCCCAGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCGTGGT 1111389 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 |||||||| | ||| ||||||||| ||||| |||||| || || ||||| || || | Sbjct 1111390 TCTCGCTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAA 1111449 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | |||||||| | | ||| ||||||||||||||||||||||||||||||| | Sbjct 1111450 TCAAAACTTCCTGGGGATTTTTCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGCC 1111509 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||| | || || || ||||| Sbjct 1111510 CTCTTACATCCTGGGTCACCAC 1111531 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/223 (70%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 ||||||| ||| ||| || |||||||||| ||||| || | ||| ||||| |||| Sbjct 1108542 ACAGTTTCCCTGTAGTCGGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCCT-- 1108599 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| || | || || ||||| | || || ||||| || |||||||| || || Sbjct 1108600 -TCCCCACCTGTGTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGATGTTGTTCCA 1108658 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 || | ||| ||| | | ||||| || || || || || || || ||||| | Sbjct 1108659 TTGGGGTGTGACACGATCTCGGTACTGTTCTCAATCCCTGACCCAAAGACCTTCCAGGAG 1108718 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 || | ||| ||||| | |||| | ||||||||||| | |||| Sbjct 1108719 ATCATAGGGGCTGGGCAAGCATTGGCAGAGCAAGTGGTATTTA 1108761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578134165363200