Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1484 123 6e-23 seq1227 111 4e-19 seq3059 102 2e-16 seq87 102 2e-16 seq4133 93.3 1e-13 seq2985 87.8 4e-12 >seq1484 Length=2418587 Score = 123 bits (136), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 206197 GGAAAAACGATCACT-TTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAA 206255 || || || |||||| || || || || || || ||||| ||| |||||| || Sbjct 499684 GGGAAGACCATCACTCTTCGAGGTTGAGCCCTCGGATACAGTAGAAAATGTAAAGGCCAA 499625 Query 206256 GATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCA 206315 ||| || || || ||||||||| || ||| |||||||| ||||| || || ||||| Sbjct 499624 GATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTTGCTGGCAAGCA 499565 Query 206316 GTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCT 206375 ||||||||||| | |||||| | || |||||| | || || ||||| |||||||| || Sbjct 499564 ACTGGAAGATGGATGTACTTTGTCTGACTACAACATGCAAAAGGAGTCGACTCTTCATCT 499505 Query 206376 TGTTTTGAGACTTCG 206390 || ||||||||||| Sbjct 499504 AGTGTTGAGACTTCG 499490 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || || |||||||| ||||| || || | || ||||||| |||||| Sbjct 499490 CGAAGTCTCAACACTAGATGAAGAGTCGACTCCTTTTGCATGTTGTAGTCAGACAAAGTA 499549 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||||||||| ||||| || || ||||| || | ||| || Sbjct 499550 CATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 499593 >seq1227 Length=586938 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || ||||| |||||| |||| ||||| |||| Sbjct 15602 CAGATCTTTGTGAAGACCCTCACTGGTAAAACCATCACTCTGGAGGTGGAGCCCAGTGAC 15543 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| |||||||||||||| || || ||| || Sbjct 15542 ACCATCGAGAATGTCAAGGGGAAGATACAAGAAAAAGAAGGCATCCCCCCAGACCAGCAG 15483 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| ||||| || ||| |||||||||| | || || | || |||||| || Sbjct 15482 AGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATC 15423 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| ||||| ||||| || Sbjct 15422 CAGAAGGAGTCCACTCTGCACCTGGT 15397 Score = 86.0 bits (94), Expect = 1e-11 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| |||| ||||| |||||| |||| || ||| Sbjct 13073 ACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCC 13014 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| ||||| || || || ||| || || || ||||| ||||| || Sbjct 13013 AAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAA 12954 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | || || | || |||||| ||||||||||||| ||||| ||| Sbjct 12953 CAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCAC 12894 >seq3059 Length=469066 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| |||||| |||| Sbjct 20306 AAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAAC 20247 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| ||| || ||| || || || ||||| Sbjct 20246 GTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTT 20187 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 20186 GCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCG 20127 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 20126 ACTCTGCACCTGGT 20113 >seq87 Length=1745107 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||||||||| |||||| |||| Sbjct 605852 AAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGTGACACCATCGAGAAC 605793 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| ||| || ||| || || || ||||| Sbjct 605792 GTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTT 605733 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 605732 GCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCG 605673 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 605672 ACCCTGCACCTGGT 605659 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| |||| ||||| |||||| |||| Sbjct 606080 AAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAAC 606021 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| || ||| || || || ||||| Sbjct 606020 GTGAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCAGCAGAGGCTCATCTTT 605961 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 605960 GCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCG 605901 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 605900 ACCCTGCACCTGGT 605887 >seq4133 Length=1091651 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 206200 AAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATT 206259 || || ||||| |||| ||||| | |||||| | || || ||| ||||| Sbjct 881116 AAGACCATCACCCTGGAGGTGGAGCCTAGTGACACCATTGAGAACGTGAAGGCCAAGATC 881175 Query 206260 CAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTG 206319 || || || ||||| ||| || ||| || || || ||||| ||||| |||||| || Sbjct 881176 CAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTG 881235 Query 206320 GAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||| | ||| | | ||||||||| ||||||||||||| || || ||||| || Sbjct 881236 GAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGT 881294 >seq2985 Length=258859 Score = 87.8 bits (96), Expect = 4e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 206256 GATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCA 206315 ||| || || || ||||| ||| || ||| || || || ||||| ||||| ||||| Sbjct 227220 GATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAGCA 227279 Query 206316 GTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCT 206375 | |||||||||| | ||| | | ||||||||| ||||||||||||| || || ||||| Sbjct 227280 GCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCT 227339 Query 206376 TGT 206378 || Sbjct 227340 GGT 227342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181197067481832