Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq2160 111 5e-21 seq3690 107 6e-20 seq2245 104 7e-19 seq2244 104 7e-19 seq1826 104 7e-19 seq2212 102 3e-18 seq417 102 3e-18 seq5012 100 9e-18 seq3219 98.7 3e-17 seq1227 98.7 3e-17 seq381 98.7 3e-17 seq194 98.7 3e-17 seq2699 95.1 4e-16 seq2108 93.3 1e-15 seq342 91.5 5e-15 seq2285 89.7 2e-14 seq1463 87.8 6e-14 seq352 87.8 6e-14 seq865 86.0 2e-13 seq1240 80.6 8e-12 >seq2160 Length=291362 Score = 111 bits (122), Expect = 5e-21 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 95425 TGGCCGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 95484 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 95485 TCCCGGGTTTCGGC 95498 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 85419 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 85360 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 85359 CCGGGTTTCGGC 85348 Score = 102 bits (112), Expect = 3e-18 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 139351 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 139292 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 139291 TCCCGGGTTTCGGC 139278 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 112946 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 112887 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 112886 CCGGGTTTCGGC 112875 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 225732 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 225673 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 225672 CCGGGTTTCGGC 225661 Score = 82.4 bits (90), Expect = 2e-12 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 2771 TGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGAT-CTAAAGGTCCCTGGTTCAACCC 2829 |||| |||||||| |||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 107247 TGAAATAGCTCAGCTGGGAGAGAGTTAGACTGAAGATATTAAAGGTCCCTGGTTCAACCC 107306 Query 2830 CGGGCTT 2836 | || || Sbjct 107307 CAGGTTT 107313 >seq3690 Length=284185 Score = 107 bits (118), Expect = 6e-20 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 222990 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 223049 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 223050 TCCCGGGTTTCGGC 223063 >seq2245 Length=57923 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 4882 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 4823 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 4822 CCGGGTTTCGGC 4811 >seq2244 Length=185960 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 185469 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 185410 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 185409 CCGGGTTTCGGC 185398 >seq1826 Length=489795 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 277248 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 277189 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 277188 CCGGGTTTCGGC 277177 >seq2212 Length=166655 Score = 102 bits (112), Expect = 3e-18 Identities = 64/69 (93%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 122452 GGCTGAAATAGCTCAGTTGAGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 122393 Query 2828 CCCGGGCTT 2836 ||| || || Sbjct 122392 CCCAGGTTT 122384 >seq417 Length=2792358 Score = 102 bits (112), Expect = 3e-18 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 ||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||| Sbjct 132576 ATGGCTGAAATAGCTCAATTGGGAGAGCATTAGTCTGAAGATCTAAAGGTCCCTGGTTCA 132517 Query 2826 ACCCCGGGCTT 2836 | ||| || || Sbjct 132516 ATCCCAGGTTT 132506 >seq5012 Length=128878 Score = 100 bits (110), Expect = 9e-18 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835 |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| | Sbjct 58027 TAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGTT 58086 Query 2836 TCAGC 2840 || || Sbjct 58087 TCGGC 58091 >seq3219 Length=2039225 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 638032 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 638091 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 638092 CCGGGTTTCGGC 638103 >seq1227 Length=586938 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 27477 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 27418 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 27417 CCGGGTTTCGGC 27406 >seq381 Length=458933 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 147367 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 147426 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 147427 CCGGGTTTCGGC 147438 >seq194 Length=2923678 Score = 98.7 bits (108), Expect = 3e-17 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||| | Sbjct 2689781 GCTGAAATAGCTCAGTTGGGAGAACATTAGACTGAAAATCTAAAGGTCCCTGGTTCAATC 2689840 Query 2829 CCGGGCTTC 2837 | ||| ||| Sbjct 2689841 CTGGGTTTC 2689849 >seq2699 Length=431900 Score = 95.1 bits (104), Expect = 4e-16 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 2771 TGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCC 2830 |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 114874 TGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAGTCCC 114815 Query 2831 GGGCTTCAGC 2840 || ||| || Sbjct 114814 AGGTTTCGGC 114805 >seq2108 Length=1067159 Score = 93.3 bits (102), Expect = 1e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| |||||| ||||||||||||| ||||||| |||||||||||||||||||||||| Sbjct 160289 TGGCCAAAGTAGTTCAGTTGGGAGAGTGTTAGACTAAAGATCTAAAGGTCCCTGGTTCAA 160348 Query 2827 CCCCGGGCTTCAGC 2840 || ||| |||||| Sbjct 160349 TCCTGGGTTTCAGC 160362 >seq342 Length=1777718 Score = 91.5 bits (100), Expect = 5e-15 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||| | |||||||||||||||||||||| ||||||||||||||||||||||||| | | Sbjct 1668067 GCTGGAAAAGCTCAGTTGGGAGAGCATTAGCCTGAAGATCTAAAGGTCCCTGGTTCGATC 1668008 Query 2829 CCGGG 2833 ||||| Sbjct 1668007 CCGGG 1668003 Score = 87.8 bits (96), Expect = 6e-14 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| ||||||||||| |||||||||||||||||| | |||||| Sbjct 1665463 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGTTCTAAAGGTCCCTGGTTCGATCCCGGG 1665406 Score = 87.8 bits (96), Expect = 6e-14 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| ||||||||||| |||||||||||||||||| | |||||| Sbjct 1666672 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGTTCTAAAGGTCCCTGGTTCGATCCCGGG 1666615 Score = 82.4 bits (90), Expect = 2e-12 Identities = 58/65 (89%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| | | Sbjct 1659917 GCTGAA-TAGCTCAGTTGGGAGAGTGTTAGATTGAAGATCTAAAGGTCCCTGGTTCGATC 1659859 Query 2829 CCGGG 2833 || || Sbjct 1659858 CCAGG 1659854 >seq2285 Length=388247 Score = 89.7 bits (98), Expect = 2e-14 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 2772 GAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCG 2831 ||| |||||||||||||||| | ||||||||||||| || ||||||||||||||| || | Sbjct 104712 GAAATAGCTCAGTTGGGAGAACCTTAGACTGAAGATGTAGAGGTCCCTGGTTCAATCCTG 104771 Query 2832 GGCTTCAGC 2840 || |||||| Sbjct 104772 GGTTTCAGC 104780 >seq1463 Length=760908 Score = 87.8 bits (96), Expect = 6e-14 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 254849 GCTGAAATAGCTCAGTTGGGAGATAATTAGGCTGAAGATCTAAAGGTCCCTGGTTCAA 254792 >seq352 Length=1443348 Score = 87.8 bits (96), Expect = 6e-14 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||||| |||||| |||| |||||||||||||||||| |||||||| ||||| Sbjct 287472 AAATAGCTCAGTTAGGAGAGTGTTAGGCTGAAGATCTAAAGGTCCTTGGTTCAATCCCGG 287531 Query 2833 GCTTCAGC 2840 | |||||| Sbjct 287532 GTTTCAGC 287539 >seq865 Length=3808272 Score = 86.0 bits (94), Expect = 2e-13 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||| |||| ||||| ||||||||||||||||||||||||||||||| | Sbjct 3237677 GCTGAAATAGCTCTGTTGAGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAGTC 3237736 Query 2829 CCGGGCTTCAGC 2840 | ||| ||| || Sbjct 3237737 CTGGGTTTCGGC 3237748 >seq1240 Length=1952959 Score = 80.6 bits (88), Expect = 8e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||||||||||| |||||||||||| ||||||||||||||||||| || || Sbjct 1242419 AAATAGCTCAGTTGGGAGACTGTTAGACTGAAGACCTAAAGGTCCCTGGTTCAATCCTGG 1242360 Query 2833 GCTT 2836 | || Sbjct 1242359 GTTT 1242356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15842459160840