Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq640 459 3e-124 seq1875 282 5e-71 seq1234 170 2e-37 seq1461 143 3e-29 seq494 136 5e-27 >seq640 Length=1279041 Score = 459 bits (508), Expect = 3e-124 Identities = 488/644 (76%), Gaps = 5/644 (1%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||||||||||| || | |||||||||||| || || || | | |||||| ||| Sbjct 1126926 GTGGTGACCCAGGATGTAAGAGGGCTGCTGAACACACCTGCTTCTTTAAGATGCTCTCTG 1126867 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 | | | | ||||| || ||||||| || ||||| ||||||||| | | ||||| Sbjct 1126866 AAAAATCCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAA 1126807 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| || | ||| | |||| ||||| || |||||||| || || ||||||||| Sbjct 1126806 AACATGATCACCTACAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAG 1126747 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||||||||| |||||| ||||||||||| || || |||||||||||||| Sbjct 1126746 ATAAACATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTG 1126687 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || |||| ||| ||||| ||||||||||| |||||||| ||||| || ||||| || Sbjct 1126686 GAAGATGAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGA 1126627 Query 171372 GTGGCCTGCCTCACCCTCTCCGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGAT 171431 | ||||||||||| |||| |||||| || || || || |||||| | | ||| Sbjct 1126626 ATAGCCTGCCTCACTCTCT-----TTGCCCACAGTATTCCTTCACTATAAACTATCTGAA 1126572 Query 171432 GACCACCTGAACATCACCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAG 171491 || ||||| || | ||| || ||||||||||| |||| | ||| ||| | |||||| Sbjct 1126571 GATCACCTAAATACCACTTGCTCTGCCAATGCTTGCCCAGCCCCTATGATCTCCTGGAAG 1126512 Query 171492 ATTTCGGGGTCAGAAATTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACT 171551 | | ||||||| ||||| ||||||| |||| | | || || | |||||||| || Sbjct 1126511 GTCTTTGGGTCAGGGATTGAGAACAGTACCGAGATCGTGTCACACCCCAATGGAACAACA 1126452 Query 171552 TCTGTAACCAGTGTACTCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATC 171611 ||||| ||||| | ||||| | ||||||||||||| ||| |||| ||||| || ||| Sbjct 1126451 TCTGTCACCAGCATCCTCCAGATCAAAGACCCCAAGACACAGGTGGGGAAGGATGTGATC 1126392 Query 171612 TGCCAAGTGTGGCACCTGGGAAATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTATT 171671 ||||| ||| |||||||| | ||| || ||| ||| ||||||| | ||| || || Sbjct 1126391 TGCCAGGTGCTACACCTGGGGACTGTGACCGACTACAGGAAAACTGTGAACAAAGGCTTT 1126332 Query 171672 TGGTTTTCAGTCCCGTTGCTGATAAGTCTCTTGTCTTTGGTAAT 171715 ||||||||||| || || || |||| || | || |||||||| Sbjct 1126331 TGGTTTTCAGTTCCACTGTTGTTAAGCATCGTCTCCTTGGTAAT 1126288 >seq1875 Length=1247885 Score = 282 bits (312), Expect = 5e-71 Identities = 254/319 (80%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||||||||||| || | |||||||||||| || || || | | |||||| ||| Sbjct 1111531 GTGGTGACCCAGGATGTAAGAGGGCTGCTGAACACACCTGCTTCTTTAAGATGCTCTCTG 1111472 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 | | | | ||||| || ||||||| || ||||| ||||||||| | | ||||| Sbjct 1111471 AAAAATCCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAA 1111412 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| || | ||| | |||||||||| || |||||||| || || ||||||||| Sbjct 1111411 AACATGATCACCTACAGCGAGAACCACGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAG 1111352 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||||||||| |||||| ||||||||||| || || |||||||||||||| Sbjct 1111351 ATAAACATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTG 1111292 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || |||| ||| ||||| ||||||||||| |||||||| ||||| || ||||| || Sbjct 1111291 GAAGATGAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGA 1111232 Query 171372 GTGGCCTGCCTCACCCTCT 171390 | ||||||||||| |||| Sbjct 1111231 ATAGCCTGCCTCACTCTCT 1111213 Score = 179 bits (198), Expect = 4e-40 Identities = 206/277 (74%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || |||||||| || || || || |||||| | | ||| || ||||| || | ||| || Sbjct 1108807 GTACAGCCCACAGTATTCCTTCACTATAAACTATCTGAAGATCACCTAAATACCACTTGC 1108748 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||||||| |||| | ||| ||| | |||||| | | ||||||| ||||| Sbjct 1108747 TCTGCCAATGCTTGCCCAGCCCCTATGATCTCCTGGAAGGTCTTTGGGTCAGGGATTGAG 1108688 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||||| |||| | | || || | |||||||| || ||||| ||||| | ||||| Sbjct 1108687 AACAGTACCGAGATCGTGTCACACCCCAATGGAACAACATCTGTCACCAGCATCCTCCAG 1108628 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 | ||||||||||||| ||| |||| ||||| || |||||||| ||| |||||||| Sbjct 1108627 ATCAAAGACCCCAAGACACAGGTGGGGAAGGATGTGATCTGCCAGGTGCTACACCTGGGG 1108568 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 | ||| || ||| ||||||||||| | ||| |||| Sbjct 1108567 ACTGTGACCGACTACAGGGAAACTGTGAACAAAGGTA 1108531 >seq1234 Length=3407371 Score = 170 bits (188), Expect = 2e-37 Identities = 148/184 (80%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||| | || | ||| || | ||||||||||||||| | ||||||||| |||||||| Sbjct 3269139 CTTCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAA 3269080 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||||||||||| |||||||| |||||| || | |||||| | Sbjct 3269079 GGGCACACCCAGGCCCATGTCCCCCGACCGCTGGTACAACTGGCAGGACAACTCCCCATT 3269020 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGC 147161 ||||||| |||||||| ||| |||||| || || || |||||| ||||| || | Sbjct 3269019 CACCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGCAGATCTGA 3268960 Query 147162 GGGG 147165 |||| Sbjct 3268959 GGGG 3268956 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||||||||| || ||||| || | || || ||||| Sbjct 3266762 GCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCTAAATCCCCTTCAGCTCTGTCG 3266703 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||||||| | | | || || ||||||| | ||| ||||| || ||||||| Sbjct 3266702 GAGAAGCCCAGGCCATCCAAGAAGTCTCGGGACCCATTGGCATCCCAAATTTTCACTCCC 3266643 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 |||| ||||| ||||||| || ||||| ||| Sbjct 3266642 TTGGAAGAGAGTTCCTTAGCGTTGGTGGATCCC 3266610 >seq1461 Length=819661 Score = 143 bits (158), Expect = 3e-29 Identities = 215/304 (71%), Gaps = 6/304 (2%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||||||| || || || | ||||| | ||||| | | | |||| Sbjct 359095 GTACTCCCTGGTGTTTGTGACCGGCCTGCTGGGCAACGTGGTGGTGGTGGTGATACTCAC 359154 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||||||||| ||||| |||||||||||||||||| |||| ||||||||||| || ||| Sbjct 359155 AAAGTACAAGCGGCTCCGGATCATGACCAACATCTACCTGCTCAACCTGGCCATTTCTGA 359214 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 |||| | | ||||| || || || |||||||||| | || ||||| |||| Sbjct 359215 TGTGCTCTTCCTATTCACACTGCCATTCTGGATTCACT--ATGTTAGGTGGAACGAGTGG 359272 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||| | ||||| |||||||||||| | || || | || ||| |||| Sbjct 359273 GTG----TTTGGCCACCGCATGTGTAAGTTGCTCTCCGGGCTCTATTACATGGGCTTGTA 359328 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 ||| || || | || |||||||| ||||| | ||| |||||||||| | || |||| Sbjct 359329 CAGTGAGATCTTTTTCATCATCCTCTTGACCATAGACCGGTATCTTGCCATCGTCCACGC 359388 Query 8910 GGTG 8913 ||| Sbjct 359389 CGTG 359392 Score = 120 bits (132), Expect = 4e-22 Identities = 200/288 (69%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| || |||||||| ||||||| |||| |||||||| Sbjct 263018 GTACTCGGTGGTGTTTGTCATTGGCCTGATTGGCAACATCCTGGTGGTCCTGGTCCTCAT 262959 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | ||||||||||||| | |||||||| ||||| ||| ||||||||||| || ||| Sbjct 262958 GCAATACAAGAGGCTCAAAAGCATGACCAGCATCTACCTCCTCAACCTGGCCATTTCTGA 262899 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 ||| | | | ||||| || ||||| ||||| ||| | | || ||| | || Sbjct 262898 CCTCATCTTCCTCTTCACGCTGCCCTTCTGGATCGACTACAA-----GGTGAA-GGATGA 262845 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||| || | |||||||||||| | | || | | | ||| |||| Sbjct 262844 CTGGATTTTCGGAGATGCCATGTGTAAGTTGCTCTTTGGGTTCTTTTTCTTGGGCTTGTA 262785 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGC 8897 |||||| || | || ||||||||| |||| | |||||||| || || Sbjct 262784 CAGCGAGATCTTCTTCATCATCCTGCTGACCATCGACAGGTACCTGGC 262737 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | ||||| | ||| ||||||||| ||| |||||||| |||||||||| Sbjct 359808 TGGACCTGGCCATGCTGGTGACAGAGGTGATCGCCTACACGCACTGCTGTGTCAACCCCG 359867 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 | ||||| || || || || || | ||||| Sbjct 359868 TGATCTATGCCTTCGTTGGTGAGAGGTTCC 359897 >seq494 Length=1389556 Score = 136 bits (150), Expect = 5e-27 Identities = 129/167 (77%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| || ||||| ||||||||| |||| ||||||| Sbjct 769874 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAAGAGGTGA 769933 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| |||| ||||| ||| || || ||||| |||||||| || |||| Sbjct 769934 TGCCAAAGGCTGAGAACCAC------------GGGCCTGACATCAAGGAGCACGTGAACT 769981 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||| ||||| |||||||| | | |||||||||| ||| Sbjct 769982 CGCTGGGGGAGAAGCTGAAGACCCTCCGGCTCCGGCTGCGGCGCTGT 770028 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| | |||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 772180 AGCTCCAAGAGAGGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 772239 Query 178522 TAGAAGCTTACATGACAACAAAAATG 178547 ||||| | ||| ||||||| || ||| Sbjct 772240 TAGAAACCTACGTGACAACGAAGATG 772265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583187562028800