Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2972 107 2e-18 seq1286 87.8 1e-12 >seq2972 Length=388121 Score = 107 bits (118), Expect = 2e-18 Identities = 96/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| |||||| || || || ||||| ||||| || |||||||| Sbjct 370929 CGGTTTAGCCAAGAAGTTCAGATTACC-GAGGCCCGTTGTTTCTATGGCTTCCAAATTGC 370987 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| |||||||| ||||| || || || || ||||| |||||| Sbjct 370988 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAAGAT 371045 Score = 105 bits (116), Expect = 5e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| | || || ||||| | ||||||||||| |||||||| || || |||||| Sbjct 372650 GGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCG 372709 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 | ||||| ||| | ||||||||||| |||||||||| | |||||||| ||||| Sbjct 372710 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGA 372765 >seq1286 Length=2059838 Score = 87.8 bits (96), Expect = 1e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | |||||||| || || | |||||| ||| ||||||| ||||| |||||||| Sbjct 1555207 TTTGTCATCTTTCCAATCCAGTACCCTGACATTTGGAAAATGTATAAAAAGGCACAGGCA 1555266 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || |||||||||||||| || Sbjct 1555267 TCCTTCTGGACAGCAGAAGAGGT 1555289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397256466157960