Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1122 98.7 1e-15 seq635 95.1 1e-14 seq2972 86.0 7e-12 >seq1122 Length=2373879 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCA-GCAAGACGCGTACCGAATTG 117363 ||||| ||||| |||| || |||| |||||||||||| |||| | ||||| || || Sbjct 2061386 GTGAAGATGTATCGAGGACTAGCAGAGTCCTTGCCACCATGCAA-CCTGGTACCAAACTG 2061444 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| | |||| ||| |||||||| || ||| |||||||||||| |||||||| |||| Sbjct 2061445 ACCAATGGGCTGCAAAAGGTTCAGATTATTGCTGCCCACAAAGTTCTGAGCCAAATTGAT 2061504 Query 117424 AATCGT 117429 ||| || Sbjct 2061505 AATGGT 2061510 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | ||||||||||| || || || |||||||| Sbjct 2061386 GTGAAGATGTATCGAGGACTAGCAGAGTCCTTGCCACCATGCAACCTGGTACCAAACTGA 2061445 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | ||||| || || ||| |||||| || |||||||||||||| | | Sbjct 2061446 CCAATGGGCTGCAAAAGGTTCAGATTATTGCTGCCCACAAAGTTCTGAGCCAAATTGATA 2061505 Query 152149 ATCGT 152153 || || Sbjct 2061506 ATGGT 2061510 >seq635 Length=1345333 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| ||| |||||||| ||||| || ||| || || || || || Sbjct 70391 GTGAAAATATAACGAGGGCTCGCAGCATCTTTGCCCCCGTGAAGTCGAGTTCCAAACTGA 70450 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | ||||||| ||||||||||| ||||||||||| ||| Sbjct 70451 CCAATAGGCTGAAGCAAGTTGATGTTGTTGCTCCCCACAAAGTTCTGAGCCAAGTTCACA 70510 Query 117425 ATCGT 117429 || || Sbjct 70511 ATAGT 70515 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| ||||| || || || ||||||||||| Sbjct 70391 GTGAAAATATAACGAGGGCTCGCAGCATCTTTGCCCCCGTGAAGTCGAGTTCCAAACTGA 70450 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | ||||| ||||||| ||||| || ||||||||||| |||||| Sbjct 70451 CCAATAGGCTGAAGCAAGTTGATGTTGTTGCTCCCCACAAAGTTCTGAGCCAAGTTCACA 70510 Query 152149 ATCGT 152153 || || Sbjct 70511 ATAGT 70515 >seq2972 Length=388121 Score = 86.0 bits (94), Expect = 7e-12 Identities = 99/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 || |||||||| || | |||||| ||||||| ||||||||||| ||||| || ||||| Sbjct 372783 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 372724 Query 74832 AACCAAAAGATGG-CACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890 | ||| || || | | || ||| |||| |||||||||||||| || |||||||| Sbjct 372723 AGCCAGAATATCGACGCAAAAG-AACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 372665 Query 74891 GACAAGGCGTT 74901 || | |||| Sbjct 372664 TACCACACGTT 372654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546934238481600