Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1234 178 1e-39 >seq1234 Length=3407371 Score = 178 bits (196), Expect = 1e-39 Identities = 136/161 (84%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||| ||||| |||||||| |||||| |||||||||| |||||||| | |||| Sbjct 3268963 GATCTGCCTCTCATGGCCCTCCCCCCATGCCACGCCCTCTGCCAGTTCTACGTGGTGAAT 3269022 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||||| ||||||||||| | || || || ||||| |||||||| | || ||||| ||| Sbjct 3269023 GGGGAGTTGTCCTGCCAGTTGTACCAGCGGTCGGGGGACATGGGCCTGGGTGTGCCCTTC 3269082 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||||| || ||||| |||||||| ||||||||||| || Sbjct 3269083 AACATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 3269123 Score = 178 bits (196), Expect = 1e-39 Identities = 136/161 (84%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| ||||| || ||||||||||| ||||| || | ||| Sbjct 3269123 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACACCCAGGCCC 3269064 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||| ||||| || || || | ||||||||||| |||||||||| | |||||||| ||| Sbjct 3269063 ATGTCCCCCGACCGCTGGTACAACTGGCAGGACAACTCCCCATTCACCACGTAGAACTGG 3269004 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| |||||| |||||||| ||||| ||||| ||||| Sbjct 3269003 CAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGCAGATC 3268963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448031589690240