Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq1152 226 2e-54 seq640 206 2e-48 seq1875 192 5e-44 seq3680 113 4e-20 seq3794 104 2e-17 >seq1152 Length=488220 Score = 226 bits (250), Expect = 2e-54 Identities = 386/555 (70%), Gaps = 11/555 (2%) Strand=Plus/Minus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || | ||||| || | || |||||||| || || || || || ||| Sbjct 271201 CTAAACTGCATCGTCGCTGTGTCCCAGAACATGGGCATCGGCAAGAACGGGAACCTG--- 271145 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCT---TCTTCCACT 2256 ||| || || | |||||||| | |||| |||| |||||| | ||||| Sbjct 271144 --GCCACCGCTCAGGAATGAATTCCAGTATTTCCAAAGAATGACTACAGTCTCTTCAGTA 271087 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||||| || |||||| | || ||||| ||||| || |||| || Sbjct 271086 GAAGGTAAACAGAATGTGGTGATTATGCGTAGGAAGACCTGGTTCTCCATTCCAGAGAAG 271027 Query 2317 AGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCA 2376 | | ||||| || ||||||| ||| | |||||||||||| | || || || || ||| Sbjct 271026 AATTGACCTTTAAAGGACAGAATTAATATAGTTCTCAGTAGAGAACTCAAGGAACCTCCA 270967 Query 2377 CGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCA 2436 || ||||| ||| |||| |||||| | ||| | || | ||| |||| || ||| Sbjct 270966 AAGGGAGCTCATTTTCTTGCCAAAAGTCTGGATGATGCCTTTGAACTTATTGAAGATCCA 270907 Query 2437 GAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAG 2496 ||||||||| | | || || | | |||||||| | || || || ||||| ||| |||| Sbjct 270906 GAATTAAAAAATAAAGTAGACATGGTTTGGATACTGGGAGGCAGTTCTGTTTATAAGGAA 270847 Query 2497 AGCAT-TACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAA-AAATTTG 2554 ||| ||||| | || | | || ||| | |||||||| |||| || |||| Sbjct 270846 GCCATGAACAAG-CCAGGCCATGTTAGACTATTTGTGACAAGGATCAAGCAAGAATTTTG 270788 Query 2555 AATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTC 2614 || ||||| | | |||||||||||| | || ||||| |||| ||| | |||| || Sbjct 270787 AAAGTGATGCGTTTTTCCCAGAAATTGAATTTGAAAAATATAAACTTCTTCCAGAATATC 270728 Query 2615 CAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATG 2674 |||||||||| | | || || || ||||| || |||| ||||||||||| |||||| Sbjct 270727 CAGGTGTTCCTTTGGATGTCCAGGAGGAAAAAGGCATTAAGTACAAATTTGAAGTATATG 270668 Query 2675 aaaaaaaaaCATAAT 2689 |||| || | |||| Sbjct 270667 AAAAGAACAATTAAT 270653 >seq640 Length=1279041 Score = 206 bits (228), Expect = 2e-48 Identities = 317/449 (71%), Gaps = 5/449 (1%) Strand=Plus/Minus Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334 || || |||||| | ||||| |||||||||||| | || || |||||||||||||||| Sbjct 1126860 CCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAAAACATG 1126801 Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394 ||| | || | |||| |||||||| || ||||| || ||||| || || || ||| Sbjct 1126800 ATCACCTACAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAGATAAAC 1126741 Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454 || || |||| ||||| ||| |||| || ||||||||||| || || ||||| ||| Sbjct 1126740 ATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTGGAAGAT 1126681 Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514 || | ||| |||||||| | ||||| || ||||| ||||| ||||| |||||||||| Sbjct 1126680 GAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGAATAGCC 1126621 Query 1515 TGTCTAACCCTTTTTGTACCATCCCGGGCTTCTATAAGCTATGAGTTATCTGAAGGAAGC 1574 || || || || |||| || | | | ||| | | |||| | ||||||||| | Sbjct 1126620 TGCCTCACTCTCTTTG--CC--CACAGTATTCCTTCA-CTATAAACTATCTGAAGATCAC 1126566 Query 1575 TTAAATGTTACGTGCTCTGCAAATGCCCGCCCAGTACCAACAATGGTATGGAATTTTAAT 1634 ||||| || |||||||| ||||| |||||| || | || ||||| | | Sbjct 1126565 CTAAATACCACTTGCTCTGCCAATGCTTGCCCAGCCCCTATGATCTCCTGGAAGGTCTTT 1126506 Query 1635 GATACAGACAGCTACAATAATACTGAAATTATAACCCACCCCAATGGAACAACATCTATT 1694 | ||| | | || | ||| || || | | ||||||||||||||||||||| | Sbjct 1126505 GGGTCAGGGATTGAGAACAGTACCGAGATCGTGTCACACCCCAATGGAACAACATCTGTC 1126446 Query 1695 GTCAGTGTTCTCTACATCAGAGATCCAAA 1723 ||| | ||| | |||| ||| || || Sbjct 1126445 ACCAGCATCCTCCAGATCAAAGACCCCAA 1126417 >seq1875 Length=1247885 Score = 192 bits (212), Expect = 5e-44 Identities = 196/256 (77%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334 || || |||||| | ||||| |||||||||||| | || || |||||||||||||||| Sbjct 1111465 CCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAAAACATG 1111406 Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394 ||| | || | ||||||||||||| || ||||| || ||||| || || || ||| Sbjct 1111405 ATCACCTACAGCGAGAACCACGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAGATAAAC 1111346 Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454 || || |||| ||||| ||| |||| || ||||||||||| || || ||||| ||| Sbjct 1111345 ATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTGGAAGAT 1111286 Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514 || | ||| |||||||| | ||||| || ||||| ||||| ||||| |||||||||| Sbjct 1111285 GAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGAATAGCC 1111226 Query 1515 TGTCTAACCCTTTTTG 1530 || || || || |||| Sbjct 1111225 TGCCTCACTCTCTTTG 1111210 >seq3680 Length=832892 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| |||||||||||||| || || ||||||||| Sbjct 249343 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGCGCATCGTGGCCTTCTTTGAG 249402 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || || || || ||||||||||| |||||||| | | || | |||| || |||| | Sbjct 249403 TTCGGAGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAGC 249462 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 249463 ATCGCCCTGTGGATGACCGA 249482 >seq3794 Length=1112998 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 2462 TTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATTA-CAAGATCTTGCAAACAG 2520 |||||||| | || || || ||||||| |||| ||| | |||| | || | | Sbjct 441877 TTTGGATAGTGGGAGGCAGTTCTGTCTGCAAGGAATCCATAAACAAGC-CAGGCCATCTT 441935 Query 2521 ATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAATT 2580 | || ||| | |||||||| ||||| |||||||| ||||||||| || ||| ||||| Sbjct 441936 AGACTATTTGTGACAAGGATCATGCAAGAATTTGAAAGTGATACATTTTTTCCACAAATT 441995 Query 2581 AATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAA 2640 || || || |||| || | |||| | |||||||||| |||| || || | Sbjct 441996 GATTCGGAAAAGTATAAACTTCTCCCAGAATATACAGGTGTTCCTTCTGATGTCCAGTAG 442055 Query 2641 GAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaaaaaCATAAT 2689 ||||| || |||| ||||||||||| |||||||||| || | |||| Sbjct 442056 GAAAAAGGCATTAAGTACAAATTTGAAGTATATGAAAAGAACAATTAAT 442104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414268721248288