Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq271 113 4e-20 seq2972 104 2e-17 seq1286 84.2 2e-11 >seq271 Length=1806658 Score = 113 bits (124), Expect = 4e-20 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 || ||| || |||| || ||||| || | | ||||| |||||||| ||| || | || Sbjct 31093 AGTGCTTGTGGAAACTGACATTCAGATAGCCCTTCCTTCTGGGTGCTATGGAAGAGTGGC 31152 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 |||| | ||||| ||||||| ||| ||| || || || || || ||||| |||||| Sbjct 31153 TCCTCGTTCTGGCTTGGCAGCAGAACCCTTCATAGATGTAGGAGCTGGTGTCATAGATGA 31212 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 ||| |||||||| || ||||| |||| ||||||||||||| Sbjct 31213 AGATTATAGAGGGAATGTTGGTGTTGTCCTGTTTAATTTTGG 31254 >seq2972 Length=388121 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| ||||| || |||||||| | || ||||| | |||| || || Sbjct 372783 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 372724 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || || |||||||| |||||||| || || ||||| ||| Sbjct 372723 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 372664 Query 4692 AC 4693 || Sbjct 372663 AC 372662 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| |||||||| || || || |||||||||||||||||||| ||||| || ||| Sbjct 371044 TCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 370985 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | || || || | |||||||| Sbjct 370984 ATTTGGAAGCCATAGAAACAACGGGCCTCGGTAATCTGAACTTC 370941 >seq1286 Length=2059838 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATA 4991 || || ||||| || || || || ||||||||||||||||| || || | ||||| ||| Sbjct 1560030 ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATA 1559971 Query 4992 AAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 || |||| || | | ||||| || |||||||| || | ||| || | ||||||||| Sbjct 1559970 AAATACTTCTCTCCCGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTGATAAATCAAC 1559912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426835209356936