Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq11 136 6e-27 seq1286 107 3e-18 seq2972 86.0 9e-12 >seq11 Length=524769 Score = 136 bits (150), Expect = 6e-27 Identities = 110/133 (83%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 426759 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 426700 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| |||||||| || ||||||||||||||||| ||||| || || | | |||||| Sbjct 426699 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 426640 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 426639 TTTCTTACACCAT 426627 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || |||| ||| || ||||| ||||| | || || ||||| || || || || || || Sbjct 403052 CTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGATG 402993 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | ||||| |||| || ||| | || || || |||||||| | | Sbjct 402992 GCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAAAGTATCCAGT 402933 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCAT 77502 || | |||||| || || | |||| ||||| || || ||||| Sbjct 402932 TCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACCTTCAT 402889 Score = 86.0 bits (94), Expect = 9e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 |||||||| |||||||| || ||||||| ||||||||||||||| ||||||||||| ||| Sbjct 416041 TCAAATTCTTCTCCCCAGACCTCATCCAGACCAGGACATTCATTTGGACACATCAAAGAC 415982 Query 76580 CACTC 76584 || || Sbjct 415981 CAGTC 415977 >seq1286 Length=2059838 Score = 107 bits (118), Expect = 3e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | || || ||||| ||||| |||||||| ||||| | || | Sbjct 1564879 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 1564820 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || | Sbjct 1564819 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGG 1564760 Query 46772 CGAC 46775 | || Sbjct 1564759 CCAC 1564756 Score = 87.8 bits (96), Expect = 3e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||| ||||||||||| ||||| || ||| | Sbjct 1555290 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGG 1555231 Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212 || ||||| ||||| || ||||||| Sbjct 1555230 GTACTGGATTGGAAAGATGACAAATC 1555205 >seq2972 Length=388121 Score = 86.0 bits (94), Expect = 9e-12 Identities = 102/138 (74%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 46284 TTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTTT 46340 ||| |||||| |||| || | ||| ||| ||| | |||||| |||||||| | Sbjct 374626 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTGTCGGACTTGACATCACTCCCATCCT 374567 Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400 || || || ||||| | ||||| || || ||||| || || |||| ||| |||||||| Sbjct 374566 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTC 374507 Query 46401 CATAAAATCAAACGGATT 46418 |||||| ||||| ||||| Sbjct 374506 CATAAAGTCAAATGGATT 374489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712567310077440