Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq13208 118 1e-21 seq1286 107 2e-18 seq2972 93.3 4e-14 seq798 86.0 7e-12 seq483 86.0 7e-12 seq2464 84.2 2e-11 >seq13208 Length=1450 Score = 118 bits (130), Expect = 1e-21 Identities = 106/132 (80%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 8346 TCACTCT-GTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGC 8404 ||||||| ||| || |||| ||||||| |||| | ||| |||||| ||| | ||||| Sbjct 695 TCACTCTTGTTTCCACGGCTAGAGTGCAATGGCGCGGTCTTGGCTCACCGCACCTTCCGC 754 Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 ||||||||||| ||| ||||||||||||||||||| || |||| ||||||||||| | Sbjct 755 CTCCCGGGTTCGAGCGCTTCTCCTGCCTCAGCCTCCCGATTAGCGGGGATTACAGGGAGG 814 Query 8465 AGCCACCACGCC 8476 || ||||||| Sbjct 815 CACCCCCACGCC 826 >seq1286 Length=2059838 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| || || || | ||||| ||||| || | ||| ||||| | ||||| ||| | Sbjct 1564879 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 1564820 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | | ||| ||||| |||||||| ||||| || |||||||| || || ||||| ||||||| Sbjct 1564819 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGG 1564760 Query 23651 CCAC 23654 |||| Sbjct 1564759 CCAC 1564756 >seq2972 Length=388121 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 || || || ||||| | |||||| ||||| || | || ||||| | ||||||||| || Sbjct 372783 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 372724 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| ||||| | ||||| || ||||||||||| || || || || || |||||||| Sbjct 372723 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 372664 Query 23653 ACAAGACGT 23661 || | |||| Sbjct 372663 ACCACACGT 372655 >seq798 Length=1449608 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 8537 GAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGC 8596 |||||||||| |||| | ||||| || ||||| ||||||||| ||||||||||||||| Sbjct 701318 GAACTCCTGAGCTCAAGCGATCCTCCAGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGC 701377 Query 8597 ATGAGCCACCGCGCCTGGCC 8616 | ||||||||||| |||| Sbjct 701378 GCGTGCCACCGCGCCCGGCC 701397 >seq483 Length=1462755 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/86 (84%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 8406 TCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAA 8465 ||||||| |||||| ||||||| |||||||||||| |||||||||||| |||||| | Sbjct 634275 TCCCGGGCTCAAGCCATTCTCCAGCCTCAGCCTCC-GAGTAGCTGGGACTACAGGTGCAC 634217 Query 8466 GCCACCACGCCAAGCTAA--TTTTTG 8489 |||||| ||| |||||| |||||| Sbjct 634216 GCCACCGAGCCCAGCTAAGCTTTTTG 634191 >seq2464 Length=1269389 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 8537 GAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGC 8596 |||||||||| |||| ||||||| || ||||| ||||||| | ||||||||||||||| Sbjct 1105617 GAACTCCTGAGCTCAAGTGATCCTCCAGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGC 1105676 Query 8597 ATGAGCCACCGCGCCTGGC 8615 | ||||||||||| ||| Sbjct 1105677 GCGCGCCACCGCGCCCGGC 1105695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521219485828800