Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq1517 174 2e-38 seq823 100 4e-16 >seq1517 Length=2674573 Score = 174 bits (192), Expect = 2e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| ||||| || | |||||||||||| |||||||| || ||||| ||||| Sbjct 113240 GTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAGCACATCACACACT 113299 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||||||||||| ||||| || ||||| |||||||| || ||||| ||||| ||||| Sbjct 113300 CTGTTGTGTTCCCGCAGCCAAATGGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 113359 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 | || || || ||||| | || || ||| || || | || || |||||||| | Sbjct 113360 ACTTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAACATGAGGCGGGTAGATCATTTCG 113419 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 ||||| |||||||| | ||| |||||||| || || | |||||||| Sbjct 113420 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATTAATCATCT 113468 Score = 152 bits (168), Expect = 7e-32 Identities = 216/304 (71%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | ||| | || || ||||| || || ||||| || |||| ||||||||||| | Sbjct 111555 GAACACTGAATGAGGTAAAGGGACAGCCTTTCACGTTACTGCAGATGAGAGACTGAATTG 111614 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 || | |||| ||| || || || ||||| ||||| ||||| |||||||||||| Sbjct 111615 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCGAAAGTGCTAGGCTTCCAGTACT 111674 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 | || ||||| || || |||| || ||||| |||||||| || || || || | Sbjct 111675 CGGGAGAGCATATAGGATTACCCATAAGTCCTTTCAGGGAGAATGGTGCTCCAGCTTCTA 111734 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 ||| |||| || |||||||||| ||||||||||| || |||| | ||| || | Sbjct 111735 CCATGGTCTCCCCAAAGATGGCGTCTGGACGGGGCTTCTCTACCAGAAGGGCGGGATAAA 111794 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 ||||| || || | |||||| || || || | || ||||| || ||||| |||| Sbjct 111795 ACTCCATGGCATCTATGTCTCCATAGAGCGCTTCTAACTCTGCAGCCATTTCCTTCTCTC 111854 Query 8583 CTGT 8586 |||| Sbjct 111855 CTGT 111858 Score = 111 bits (122), Expect = 2e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 ||| |||||||| | ||| |||||||| || || ||||| | ||||| ||| | || Sbjct 114254 TCTCACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 114313 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 ||| || || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 114314 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCAGATTTGTGCCCTGGGGATC 114373 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCT 9827 ||| |||| | || | ||||| ||||| |||||| | | || ||| || |||| Sbjct 114374 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAACTTCTTTCGAATCAGGAAGCT 114432 >seq823 Length=287446 Score = 100 bits (110), Expect = 4e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| || | |||||||| || |||||||||| ||| || || Sbjct 249576 TCACCGATGAGGATGAGGCGGGCCGTCTGGAAGAGCTGCTCGTCACCCCAGGTCGGGTGC 249517 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| | || ||||| | |||||| || | ||||| || |||||||| | | Sbjct 249516 TCAGCCTTCAGCAGGTCACACACGCGGTTGTGCTCACGCAGCCATATCGTGGCGTAGAGC 249457 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 ||||||||||| | ||| ||||| |||| || || || |||| Sbjct 249456 ATGAGCCCAGGAAGCAGCCCAAACACCTCCTGGCCCACGGCCA 249414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716507680135680