Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq10 446 1e-120 seq5 286 2e-72 seq23 165 6e-36 seq7 120 2e-22 seq24 86.0 5e-12 >seq10 Length=104305016 Score = 446 bits (494), Expect = 1e-120 Identities = 432/554 (78%), Gaps = 6/554 (1%) Strand=Plus/Minus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||||||||||||||||| | ||| || || || |||| Sbjct 75902667 ATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGGACAT 75902608 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 || |||||| ||||||||| | |||||| ||||| || | ||||| |||||| | Sbjct 75902607 CCAAAGGAACACCCGGATATTCTGGAAGAAGTTTATATTTTTCAAAATCAATTTCTGGGA 75902548 Query 4088 AAAAGGTGTCACATTCAAAGT-CTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCAT 4146 |||| | |||| |||||| | ||||| ||||||| |||||||| ||| ||| || || | Sbjct 75902547 AAAACGCATCACTTTCAAAATTCTTGCTTGATCCTTGTCACAAATAGTCTAACATGGCCT 75902488 Query 4147 GGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACT 4206 || | |||| ||||| ||||| |||||||| ||||| | |||||| |||||||||||| Sbjct 75902487 GGCTTGTTCATGGCTTCCTTATAAACAGAACTGCCTCCCAGTATCCAAACCATGTCTACT 75902428 Query 4207 TTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAA 4266 |||||| ||||||||| | ||| |||||| || |||||||| | ||| || || | | Sbjct 75902427 TTATTTTTTAATTCTGGATCTTCAATAAGTTCAAAGGCATCATCCAGACTTTTGGCAAGA 75902368 Query 4267 AAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCT 4326 |||||||||| | |||| | ||||| ||||| | |||||||| | |||||||||| | Sbjct 75902367 AAATGAGCTCCCTTTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCC 75902308 Query 4327 TTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAA 4386 |||||||| | |||||||| ||||| |||||||| ||||| ||| ||||||||| | | Sbjct 75902307 TTTAAAGGTCAATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACGCATAATCACCACA 75902248 Query 4387 TTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTC 4446 ||||||||| || ||| ||||| ||||||||||||||||||| | || |||||| Sbjct 75902247 TTCTGTTTACCTTCTACTGAAGAGACTGTAGTCATTCTTTGGAAATACTGGAATTCATTC 75902188 Query 4447 ATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCA 4506 | || |||| || ||| || | ||||| ||||||||||| || | ||||| Sbjct 75902187 CTGAGCGGTGGC-----CAGGTTCCCGTTCTTGCCGATGCCCATGTTCTGGGACACAGCG 75902133 Query 4507 ACAATGCAGTTTAG 4520 |||||||||||||| Sbjct 75902132 ACAATGCAGTTTAG 75902119 >seq5 Length=121191424 Score = 286 bits (316), Expect = 2e-72 Identities = 325/432 (75%), Gaps = 7/432 (2%) Strand=Plus/Plus Query 3979 TTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAACA 4038 || || |||||||||||||| ||||||| | |||||| || || ||| ||| ||||| Sbjct 39897883 TTTTCTTATACTTCAAATTTATACTTAACAACTTTCTCCTCCTGGACA---GAAGGAACA 39897939 Query 4039 CTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAG-GTGTC 4097 | ||| |||||| | |||| | || || || | |||| ||| ||||||| | || Sbjct 39897940 CCTGGGTATTCTGGGAGAAGTATATAATTTTCCAAATCATTTTCAAGAAAAAAATGCATC 39897999 Query 4098 ACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCAT 4157 || |||||| |||||| |||| | | |||||| | | |||||| || ||| | |||| Sbjct 39898000 ACTTTCAAATTCTTGCGTGATTATTGCCACAAATAATCTAAGATGGCCTGGCTTGTTCAT 39898059 Query 4158 AGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAA 4217 ||||| ||||| | ||||| | ||| |||| | ||||| |||| |||||||| ||| Sbjct 39898060 GGCTTCCTTATATA--GAACTGCTTCCTGCTATCAA-ACCATATCTAGTTTATTTGTTAA 39898116 Query 4218 TTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCT 4277 | |||| || ||| |||||| ||| |||||||| | ||| || || | ||||||||||| Sbjct 39898117 TGCTGGTTGCTCGATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCC 39898176 Query 4278 ATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCG 4337 |||||| | ||||| ||||| | |||||| | ||||||||| ||||||||| | Sbjct 39898177 CTGTGGAGGTTCCTTGAGTTCTCTATTGAGAATTATGTTAATTCTGTCTTTTAAAGATTG 39898236 Query 4338 GTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATC 4397 ||||| || ||||| |||||| ||||| ||||||||||||| |||||||||||||| Sbjct 39898237 ATTCTTTTCTGGAATGTTGAACCACGTCTTCCTACCCATAATCACCAAATTCTGTTTATC 39898296 Query 4398 TGGTACAGAAGA 4409 | ||| || || Sbjct 39898297 TTCTACTGATGA 39898308 Score = 219 bits (242), Expect = 3e-52 Identities = 195/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||||||||||||||||| | ||| || || || |||| Sbjct 48414239 ATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGGACAT 48414298 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 |||| |||||| || ||||||| | |||||| || || || ||||| || ||||| Sbjct 48414299 CAGAAGGAACACCTGTATATTCTGGGAGAAGTTTATACTTTTCCGAATCAATTTGTGGAA 48414358 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 ||||||| |||| |||||| |||||||||||||| |||||||| ||| |||||| || || Sbjct 48414359 AAAAGGTATCACTTTCAAATTCTTGCATGATCCTTGTCACAAATAGTCTAAGATGGCCTG 48414418 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 | | | || | ||| || | |||||||| ||||| | |||||| ||||||||||||| Sbjct 48414419 GCTTGTTTATGGATTCCTTGCAGACAGAACTGCCTCCCACTATCCAAACCATGTCTACTT 48414478 Query 4208 TATT 4211 | || Sbjct 48414479 TTTT 48414482 >seq23 Length=52530062 Score = 165 bits (182), Expect = 6e-36 Identities = 184/246 (75%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 26927 AGATAGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCAC 26986 ||| |||| ||| | | || | | |||||||| || ||||| |||||||| || | ||| Sbjct 24350019 AGAAAGCTCTTAAGCCAAATGGCGGACAATGGGGGTGACGCAGGTGCAGCCCACGGCCAC 24349960 Query 26987 TAGCATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAG 27046 ||||||||||| |||| || || | ||||||| | ||| | | | || | || || Sbjct 24349959 CAGCATCTTCTCCAGCCGGAAGGAGTGAGGGCAGTGCTGAGACTCCCTTCGGAGGACCAG 24349900 Query 27047 AATCTCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAAC 27106 |||||||| ||||| | ||| ||||||||||| | ||| || || || |||||||| | Sbjct 24349899 GATCTCTTGCTGGATGGTGACAGAGTTCATGTGATGGTCCACCTTGCCTTCAGCATTGAT 24349840 Query 27107 ACATCCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTC 27166 ||| ||| ||| || ||||| || ||||| ||||||||||| || || || | || || Sbjct 24349839 ACAGCCTGAGTGGCTGCACTTGGCCTCCCAGATCACAGAGGGGTACCTCTCAGGGTCCTC 24349780 Query 27167 ATTGCG 27172 |||||| Sbjct 24349779 ATTGCG 24349774 >seq7 Length=112638659 Score = 120 bits (132), Expect = 2e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| |||| |||||||||||||| ||||||||| Sbjct 83033868 TTATAAACAGAACTGCCTCCCACTATCCAAACCACGTCTACTTTATTTGTTAATTCTGGA 83033927 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 | ||| |||||| ||| |||||||| | ||| || || | ||||||||||| | |||| Sbjct 83033928 TCTTCAATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCCTTTGGA 83033987 Query 4285 AGCTCC 4290 | ||| Sbjct 83033988 GGTTCC 83033993 Score = 116 bits (128), Expect = 3e-21 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | ||||||||| | |||||||| || |||||||| || Sbjct 83037274 CTTGAGTTCTCTACTGAGAACTATGTTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGG 83037333 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| ||||||||||||| |||||||||||| || Sbjct 83037334 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 83037382 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/112 (79%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||| || | ||||| |||||| ||||| | |||| |||||| |||||||| Sbjct 83030196 AAGTTTATATTTTTCAAAATCAATTTCTGGGAAAAACGCATCACTTTCAAATTCTTGCAT 83030255 Query 4116 GATCCTAGTCACAAACAGTTTAAGAT-CGCATGGATAACTCATAGCTTCTTT 4166 |||||| |||||||| ||| ||| || || ||| | |||| ||||| || Sbjct 83030256 GATCCTTGTCACAAATAGTCTAACATGGGCCTGGCTTGTTCATGGCTTCCTT 83030307 Score = 87.8 bits (96), Expect = 1e-12 Identities = 74/90 (82%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||||||||||||||||| | ||| || ||||| |||| Sbjct 83025669 ATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCTTGGACAT 83025728 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAA 4057 || |||||| |||||| ||| | |||| Sbjct 83025729 CCAAAGGAACACCTGGATA-TCTGTAAAAA 83025757 >seq24 Length=62714930 Score = 86.0 bits (94), Expect = 5e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||| || || |||||||||||||| || ||||| || || || | ||| |||| Sbjct 35940504 CTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCTAAATCCCCTT 35940445 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 || ||||||| | || || || ||| || || || || ||||| |||||||||| Sbjct 35940444 CAGCTCTGTCGGAGAAGCCCAGGCCATCCAAGAAGTCTCGGGACCCATTGGCATCCCAAA 35940385 Query 102153 TGTGCACGCC 102162 | | ||| || Sbjct 35940384 TTTTCACTCC 35940375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361237357757144