Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq15 140 4e-28 seq11 123 3e-23 seq14 102 1e-16 seq30 100 3e-16 seq13 82.4 9e-11 >seq15 Length=85296676 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 51806376 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 51806435 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 51806436 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 51806495 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 51806496 CTGTTTCTTACACCATA 51806512 Score = 105 bits (116), Expect = 8e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| |||| ||| || ||||||||||| | || || ||||| || || || || || | Sbjct 51830885 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 51830944 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | ||||| | || || ||| | || || | || ||| |||| Sbjct 51830945 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCA 51831004 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 54935 ||| || || || || ||| | |||| |||||||| |||||||||| Sbjct 51831005 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACCTTCATAG 51831052 Score = 96.9 bits (106), Expect = 4e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 51811063 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 51811122 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 ||||||||||||| ||||||| |||||| | ||| || || | || ||||| || | Sbjct 51811123 AATAAATGGTTTCAAAGATCTGCTTATTCAATAATTGGGCCTCTGGACTCTCAAAAGGGT 51811182 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 53565 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| Sbjct 51811183 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 51811240 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||| ||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 51817469 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 51817528 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 51817529 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 51817588 Query 54145 CGGTTCCAAGTATAT 54159 ||||||| ||| || Sbjct 51817589 AGGTTCCAGGTAAAT 51817603 >seq11 Length=107310763 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||| ||||| | ||| |||||||||||||| || ||||| || || || || | Sbjct 87470288 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 87470347 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| |||||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 87470348 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 87470407 Query 24277 C 24277 | Sbjct 87470408 C 87470408 Score = 111 bits (122), Expect = 2e-19 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 87472031 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 87472090 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 ||||| || || |||||||| | |||||||||||||| |||||| Sbjct 87472091 AATTTGGAAGCCATAGAAACAACGGGCCTCGGTAATCTGAACTTCT 87472136 >seq14 Length=84648390 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | || |||||||| |||||||| ||||| || || | || || Sbjct 64335761 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 64335702 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 64335701 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGGC 64335643 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 || ||||| ||||||| || ||||||| ||||||||||||||| ||||| |||||| | Sbjct 64326165 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGGG 64326106 Query 24693 TATTGAATTGGAAAAATAACAAATC 24717 || || |||||||| || ||||||| Sbjct 64326105 TACTGGATTGGAAAGATGACAAATC 64326081 >seq30 Length=148823899 Score = 100 bits (110), Expect = 3e-16 Identities = 178/257 (69%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 21883 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 21940 ||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| ||||| Sbjct 142679615 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 142679558 Query 21941 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 22000 | | |||||| ||| |||| |||| | || ||||| || ||| ||| ||| | || Sbjct 142679557 TCTATTTCTGGGTAAGATATCCGTTCACGAATGAGCTGTGCAATTTGATCACCCTTTTTG 142679498 Query 22001 ACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 22060 || | ||| | | ||| ||| ||||| || | || || | |||||| ||||||||| Sbjct 142679497 ACTTCAAACTTCTCTTTGCCAAGATTAAACAGGACAACACCAACATTTCCTCTATAATCT 142679438 Query 22061 TCGTCTATTACACCGCCTCCTATATC---AATGCCTTTTAGGGACAGACCAGACCTAGGA 22117 || ||||||||||| |||||| ||| | | |||| | || ||||| | |||| Sbjct 142679437 TCATCTATTACACCAGCTCCTACATCTTTGAAGTGTTTTGCTGCCAAGCCAGAACGAGGA 142679378 Query 22118 GCTATTCTACCATAGCA 22134 || | ||| |||||||| Sbjct 142679377 GCCACTCTTCCATAGCA 142679361 >seq13 Length=84240350 Score = 82.4 bits (90), Expect = 9e-11 Identities = 174/257 (68%), Gaps = 12/257 (5%) Strand=Plus/Minus Query 21883 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 21940 ||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| ||||| Sbjct 34103538 TCCAGTGGAACCAAAGCCTCTTGAACCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 34103481 Query 21941 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 22000 | | |||||| ||| |||| |||| | | || ||||| || |||| | | | || Sbjct 34103480 TCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCAAAC-----TTTTG 34103426 Query 22001 ACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 22060 || | ||| | | ||| ||| ||||| || | || || | ||| || ||||||||| Sbjct 34103425 ACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTCCCTCTATAATCT 34103366 Query 22061 TCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGA 22117 || ||||| ||||| |||||| ||| || | || | | || ||||| | |||| Sbjct 34103365 TCATCTATGACACCAGCTCCTACATCTATGAAGGGTTCTGCTGCCAAGCCAGAACGAGGA 34103306 Query 22118 GCTATTCTACCATAGCA 22134 || | ||| |||||||| Sbjct 34103305 GCCACTCTTCCATAGCA 34103289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593698266741120