Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq22 295 8e-75 seq9 113 5e-20 seq12 100 3e-16 >seq22 Length=61435874 Score = 295 bits (326), Expect = 8e-75 Identities = 268/338 (79%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||||| || ||||| ||||| | | | | |||| | ||||| |||||||||||||| Sbjct 51326050 AGCAGGGTTTCAATGTCAGGCTCGATGTCGATGGTCAGAAAGCGGCGGCTGTACCTGCGC 51325991 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||||| ||||| | ||||||| |||||||||||||||||||| |||||||||||| Sbjct 51325990 ACGGGCACACCGTCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGACGTCGTTGCGG 51325931 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| || ||||||| |||| || |||||| ||| ||| | | |||||| || Sbjct 51325930 CACACCGGGGACCAGGTGATGAACTTAGGGTCGGTCATGAGAGCAGTGGCGTCGTCACTT 51325871 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||| ||||| |||| || |||||||||||||||||||| ||| | | || || ||| Sbjct 51325870 GGCGTGGGCAGAACCTCCCGAAGGAAGGCGAAGAGCGGATGCGCCTTCTCGCCATTCACC 51325811 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||| ||||||||||||||||| |||||||| ||| || || ||||||| |||| Sbjct 51325810 TCGCACTTTTCGAAGAGCATAAAGTTGGGCTCGAACCCGCCGCCTGGTCGGACGTACTTC 51325751 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 ||| || || |||||| | |||| |||||||||||| Sbjct 51325750 AGGCAATTCAGGATCTCCTCGTTCTTGGCGTTTTCCTG 51325713 Score = 163 bits (180), Expect = 3e-35 Identities = 161/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| || ||||| || ||||| ||||| ||||| | ||| |||| Sbjct 51325455 CCTGATGCCCAAACTGGTTGCAGGGGAAGCCGAGCACGACCAGGCCCCGGGGTCCAAGGC 51325396 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||| || |||||||| ||||| ||||| ||||| | |||||||| || |||| Sbjct 51325395 GCCGCTGCAGGTCATTCATCTGGGTGTAGTCCCGCACCGTTGTGCCTCAGAGCGATGCTA 51325336 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 ||||||| ||||||| ||| |||||| | | || | | | | || || || |||| Sbjct 51325335 CGTTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGGACAGGTTGAAGGGCTCCCCGCCGG 51325276 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | ||||| || |||||||||||||| Sbjct 51325275 CCAGAGGGCGCGCGGAGAAGGCGTACAC 51325248 >seq9 Length=105708250 Score = 113 bits (124), Expect = 5e-20 Identities = 204/288 (71%), Gaps = 9/288 (3%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| |||||| || ||| ||| Sbjct 43423033 GCAGCTGCGCAGCATCTACGAGAGCA-GCTTGTCCATCGGCAACTTTGCCTCGCGCCTGC 43423091 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 43423092 TGGTGCACCTGTTCCCGGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 43423151 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || |||||| || | | |||| ||||| Sbjct 43423152 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGTATCAAGCTCATCCGCCACTAC 43423210 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAA-AGTTCCTGGC 50646 |||||| | || |||| ||| || || || || |||| ||| ||||| ||| Sbjct 43423211 GTGCAGCTTCTCTACCCACGGGCCAAGAATGACCGTGTCTGGA-CACTGGAGTTCGTGGG 43423269 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 ||||||||||||||||||||||| | |||||| || |||||| Sbjct 43423270 CAAACTGGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 43423315 >seq12 Length=91163125 Score = 100 bits (110), Expect = 3e-16 Identities = 144/201 (72%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 83085 CCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCCGTCAG---CACCCACCA 83141 |||||||| ||||| ||||||||||||||| |||| ||||| | | ||||||| Sbjct 16509858 CCAGGGTCACAAAGCGGCGGCTGTACCTGCGCAAGGGCTCACCGTCTGGGCCGCCCACCA 16509917 Query 83142 AGAACTT-CTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGC 83200 || ||| || |||| || ||| | ||| |||||||||| ||| |||||| |||| | Sbjct 16509918 GGAGCTTCCTGGAAGCTCTGGGCGAAGTCTCTGCGGCACACAGGACACCAGGGGATGAAC 16509977 Query 83201 TGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGG 83260 ||| || ||||||| | | | |||| || ||| |||||||||| | ||| Sbjct 16509978 CTGGGATCCTTCACGAGGGCCGTGGCGGCGTCACTGGGCATGCGCAGGGCCTCGCCAAGG 16510037 Query 83261 AAGGCGAAGAGCGGATGTGCC 83281 |||| |||||| | || ||| Sbjct 16510038 CAGGCAAAGAGCAGGTGCGCC 16510058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608772874285760