Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq17 134 1e-26 seq19 131 1e-25 >seq17 Length=75158596 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || | ||| |||| |||| |||||||||||| || ||||| ||||| | | Sbjct 53142965 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 53142906 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || ||||||||||| || ||| | || || ||||||||||| ||| Sbjct 53142905 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 53142846 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| || ||||| |||||| || || | ||| || |||| ||||||| Sbjct 53142845 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 53142786 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||||||||| || || || || || || ||||| Sbjct 53142785 TCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53142739 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || | ||| |||| |||| ||||||||| || || ||||| ||||| | | Sbjct 53143193 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 53143134 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || ||||||||||| || ||| | || || ||||||||||| ||| Sbjct 53143133 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 53143074 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| || ||||| |||||| || || | ||| || |||| ||||||| Sbjct 53143073 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 53143014 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||||||||| || || || || || || ||||| Sbjct 53143013 TCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53142967 Score = 131 bits (144), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || ||||| || || ||||| || || | | Sbjct 55051489 CCCCTC--AGACGGAGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGAAA 55051432 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || |||| |||||||| ||||| ||| || || ||||||||||| ||| | Sbjct 55051431 GAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAGGATGAGCCTCTGCTGGTCAGGGGGAA 55051372 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||||||||| || |||||| ||||| | ||| || |||| ||||||| | Sbjct 55051371 TGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCT 55051312 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||| ||| |||||||||||||| | ||||| || || || |||||||||| Sbjct 55051311 CCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATTTTGA 55051261 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || | ||| |||| |||| ||||||||| || || ||||| ||||| | | Sbjct 53142737 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 53142678 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || ||||||||||| || ||| | || || ||||||||||| ||| Sbjct 53142677 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 53142618 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| || ||||| |||||| || || | ||| || |||| ||||||| Sbjct 53142617 ATGCCCTCTTTGTCTTGGATCTTGCCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 53142558 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||| |||||||| || || || || || || ||||| Sbjct 53142557 TCCAGGGTGATGGTTTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53142511 Score = 125 bits (138), Expect = 6e-24 Identities = 164/226 (73%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 ||||| | || | ||| |||| |||| ||||||||| || || ||||| ||||| | || Sbjct 53143419 CCCCTTG-AGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACA 53143361 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 |||| | | || ||||||||||| || ||| | || || ||||||||||| ||| | Sbjct 53143360 GGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGA 53143301 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||| || ||||| |||||| || || | ||| || |||| ||||||| | Sbjct 53143300 TGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCT 53143241 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| || |||||||||||||| || || || || || || ||||| Sbjct 53143240 CCAGAGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53143195 >seq19 Length=64057457 Score = 131 bits (144), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || ||||| || || ||||| || || | | Sbjct 33854622 CCCCTC--AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAA 33854679 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || |||||||| ||||| ||| | || || ||||||||||| ||| | Sbjct 33854680 GAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAA 33854739 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||||||||| || |||||| ||||| | ||| || |||| ||||||| | Sbjct 33854740 TGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCT 33854799 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||| ||| |||||||||||||| | ||||| || || || |||||||||| Sbjct 33854800 CCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATTTTGA 33854850 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| || ||||| || || ||||| || || | || || || | || Sbjct 33853950 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 33854009 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| ||| | ||||||||| || Sbjct 33854010 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 33854069 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || |||| ||||||| ||||| ||| |||||| Sbjct 33854070 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTC 33854129 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | || || || || || ||||| Sbjct 33854130 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 33854161 Score = 116 bits (128), Expect = 3e-21 Identities = 162/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || ||||| || || ||||| || || | | Sbjct 33854166 CCCCTC--AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAA 33854223 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || |||||||| ||||| ||| | || || ||||||||||| ||| | Sbjct 33854224 GAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAA 33854283 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||||||||| || |||||| ||||| | ||| || |||| ||||||| | Sbjct 33854284 TGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCT 33854343 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||| |||||||||||||| | || || || || || ||||| Sbjct 33854344 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 33854389 Score = 116 bits (128), Expect = 3e-21 Identities = 162/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || ||||| || || ||||| || || | | Sbjct 33854394 CCCCTC--AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAA 33854451 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || |||||||| ||||| ||| | || || ||||||||||| ||| | Sbjct 33854452 GAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCGGGGGGAA 33854511 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||| ||||| || |||||| ||||| | ||| || |||| ||||||| || Sbjct 33854512 TGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACTT 33854571 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||| |||||||||||||| | || || || || || ||||| Sbjct 33854572 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 33854617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422243020083104