Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq17 147 2e-30 seq19 125 7e-24 seq8 96.9 4e-15 seq18 95.1 1e-14 seq11 84.2 2e-11 >seq17 Length=75158596 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||||||||||||| | || || || ||| Sbjct 53142511 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAAACCATCACCCTGGAGGTGGAGCCCAGT 53142570 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | |||||||||||||||||| | ||||| Sbjct 53142571 GACACCATCGAGAACG-TCAAGGGCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 53142629 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || ||||||||||| || | ||||||||| |||||||| Sbjct 53142630 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 53142689 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| ||| |||| ||||| || || | ||| | || || || Sbjct 53142690 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 53142737 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| | || || || ||| Sbjct 53142739 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 53142798 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | |||||||||||||||||| | ||||| Sbjct 53142799 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 53142857 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || ||||||||||| || | ||||||||| |||||||| Sbjct 53142858 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 53142917 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| || || | ||| | || || || Sbjct 53142918 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 53142965 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| | || || || ||| Sbjct 53142967 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 53143026 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | |||||||||||||||||| | ||||| Sbjct 53143027 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 53143085 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || ||||||||||| || | ||||||||| |||||||| Sbjct 53143086 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 53143145 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| ||| |||| ||||| || || | ||| | || || || Sbjct 53143146 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 53143193 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| |||||||| | || || || ||| Sbjct 53143195 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 53143254 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | |||||||||||||||||| | ||||| Sbjct 53143255 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 53143313 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || ||||||||||| || | ||||||||| |||||||| Sbjct 53143314 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 53143373 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||| ||| |||| ||||| || || Sbjct 53143374 CATCCAGAAAGAGTCCACTCTGCACCTGGT 53143403 Score = 127 bits (140), Expect = 2e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| ||||| || || ||||| ||||||||| | || || || || Sbjct 55051263 AAAATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 55051322 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| | |||| || || | || || || ||||| ||| | || Sbjct 55051323 AGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGA 55051381 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | |||||| || ||||| |||||||| |||| ||||| || || || Sbjct 55051382 CCAGCAGAGGCTCATCCTTGCCGGCAAGCAGCTGGAAGACGGCCGCACTCTTTCTGATTA 55051441 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| ||| | || ||||| || || | || ||||||| ||| Sbjct 55051442 CAACATCCAGAAAGAGTCAACCCTGCACCTGGTCCTCCGTCTGAGGGGTGGC 55051493 >seq19 Length=64057457 Score = 125 bits (138), Expect = 7e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| ||||| || || ||||| ||||||||| | || || || || Sbjct 33854848 AAAATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 33854789 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| | |||| || || | || || || ||||| ||| | || Sbjct 33854788 AGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGA 33854730 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | ||||||| || ||||| |||||||| || | ||||| || || || Sbjct 33854729 CCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTA 33854670 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| ||| | || ||||| || || | || ||||||| || Sbjct 33854669 CAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTCCGTCTGAGGGGTGG 33854619 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| Sbjct 33854617 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 33854558 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | || || |||||||| ||| | ||||| Sbjct 33854557 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCA 33854499 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| || ||||| |||||||| || | ||||| || || ||||| Sbjct 33854498 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 33854439 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| ||| | || ||||| || || | || ||||||| || Sbjct 33854438 CATCCAGAAAGAGTCGACCCTGCACCTGGTCCTCCGTCTGAGGGGTGG 33854391 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| Sbjct 33854161 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 33854102 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | || || || ||||| ||| | ||||| Sbjct 33854101 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCA 33854043 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| || ||||| |||||||| || | ||||| || || ||||| Sbjct 33854042 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 33853983 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| ||| | || ||||| || || | || ||||||| ||| Sbjct 33853982 CATCCAGAAAGAGTCGACCCTGCACCTGGTCCTTCGTCTGAGGGGTGGC 33853934 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| Sbjct 33854389 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 33854330 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | || || || ||||| ||| | ||||| Sbjct 33854329 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCA 33854271 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| || ||||| |||||||| || | ||||| || || ||||| Sbjct 33854270 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 33854211 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| ||| | || ||||| || || | || ||||||| || Sbjct 33854210 CATCCAGAAAGAGTCGACCCTGCACCTGGTCCTCCGTCTGAGGGGTGG 33854163 >seq8 Length=113384836 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || ||||| || |||||||| |||| || || || Sbjct 107173936 AAGATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTTGAGCCC 107173995 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | || ||| | |||| || || | || || || || || || | ||| Sbjct 107173996 TCGGATACAGTAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 107174055 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||| |||| |||| || ||||| || ||||| || | | || | |||||| Sbjct 107174056 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTAC 107174115 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||| || |||||| | || || |||||||||||| Sbjct 107174116 AACATGCAAAAGGAGTCTACTCTTCATCTAGTGTTG 107174151 >seq18 Length=66004023 Score = 95.1 bits (104), Expect = 1e-14 Identities = 113/151 (75%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || |||| |||||||||||||||||| |||||||| | || | || | Sbjct 4961218 TCAAGGCCAAGATTCAAGACAAAGAGGGCATCCCCCTAGACCAGCAGAGGCTGACCTTTG 4961277 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | || |||||||| || || | | ||||||| || ||||||||||||| ||| ||| Sbjct 4961278 CAGGGAAACAGCT-GAAGATGGGTGCACCCTGTCTGAATACAACATCCAGA--GAGTCCA 4961334 Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 | ||||| | || ||| ||||||||| || Sbjct 4961335 CTCTGCACTTGGTCCTGCACTTGAGGGGAGG 4961365 >seq11 Length=107310763 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| |||||||||| || ||| || | ||||| | Sbjct 87470413 TGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCGATATTCT 87470354 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 ||||||||||||| || || ||||| ||||| || || ||| || || || ||| | Sbjct 87470353 GGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAG 87470294 Query 117162 ACGAGG 117167 |||||| Sbjct 87470293 ACGAGG 87470288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515198951885440