Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq19 116 3e-21 seq17 116 3e-21 seq8 93.3 4e-14 >seq19 Length=64057457 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || ||||||||||| | |||||| ||| || Sbjct 33854409 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 33854468 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| ||||| || ||||||||||| || Sbjct 33854469 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGG 33854528 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| || || | ||| | || ||| Sbjct 33854529 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 33854588 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || ||||||||||| Sbjct 33854589 CCGGTCAGGGTCTTCACGAAAATCTGCAT 33854617 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || ||||||||||| | |||||| ||| || Sbjct 33854637 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 33854696 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || ||||| ||||| || Sbjct 33854697 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 33854756 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 33854757 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 33854816 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| ||||| || || |||||||| Sbjct 33854817 CCGGTCAGGGTTTTCACGAAGATCTGCAT 33854845 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || ||||||||||| | |||||| ||| || Sbjct 33854181 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 33854240 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || ||||| ||||| || Sbjct 33854241 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 33854300 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 33854301 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 33854360 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 33854361 CCGGTCAGGGTCTTCACGAAGATCTGCAT 33854389 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || ||||||||||| | |||||| ||| || Sbjct 33853953 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 33854012 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || ||||| ||||| || Sbjct 33854013 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 33854072 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| || || | ||| | || ||| Sbjct 33854073 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 33854132 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 33854133 CCGGTCAGGGTCTTCACGAAGATCTGCAT 33854161 >seq17 Length=75158596 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || |||||||| || || |||||| ||| || Sbjct 53142719 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 53142660 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || || |||| || | |||||| || || || |||||||| |||||| Sbjct 53142659 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 53142600 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | |||||| Sbjct 53142599 ATCTTGCCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTTTTG 53142540 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| || || || || |||||||| Sbjct 53142539 CCGGTCAAGGTCTTCACGAAGATCTGCAT 53142511 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || ||||||||||| | |||||| || || Sbjct 55051474 ACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCGTCTTCC 55051415 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || |||||| | |||||| || || || ||||| ||||| || Sbjct 55051414 AGCTGCTTGCCGGCAAGGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 55051355 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 55051354 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 55051295 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| ||||| || || |||||||| Sbjct 55051294 CCGGTCAGGGTTTTCACGAAGATCTGCAT 55051266 >seq8 Length=113384836 Score = 93.3 bits (102), Expect = 4e-14 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 118515 CCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATA 118574 || || | ||||||||| | || | |||||||| ||||| |||||||| || || | Sbjct 107174162 CCACGAAGTCTCAACACTAGATGAAGAGTAGACTCCTTTTGCATGTTGTAGTCAGACAAA 107174103 Query 118575 GTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATG 118634 || | ||| || || || || ||||| |||| || | ||||| || ||||| || Sbjct 107174102 GTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATT 107174043 Query 118635 CCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCG 118694 || ||||| || || || || || | ||| || || |||| | ||| |||||| Sbjct 107174042 CCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTACTGTATCCGAGGGCTCAACCTCG 107173983 Query 118695 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || || || ||||| || || || ||||||||||| Sbjct 107173982 AGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 107173939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433813776703648