Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq29 156 5e-33 seq15 134 2e-26 seq11 123 3e-23 seq5 102 1e-16 seq30 96.9 4e-15 seq14 93.3 5e-14 seq13 82.4 1e-10 >seq29 Length=51505224 Score = 156 bits (172), Expect = 5e-33 Identities = 199/274 (73%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 188378 GGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATCTG 188437 |||||| | || |||||| || |||||||| |||||||||| |||||||| | | Sbjct 22354590 GGATCTTTTGGTCTGATTTCAGCCATGACTTTAAACAGACATAAGCATCCCCTTAGCCCA 22354531 Query 188438 TACCTACTTTGTGGATTTACACTGTTAGAATCTCTAACGCTGGCCTCTGTTGTTACTTTC 188497 | ||| || | || ||||| | |||| ||| |||| || |||||| ||||||||||| Sbjct 22354530 TCCCTGCTCTTTGTATTTATAGTGTTGGAAGCTCTGACTGTGGCCTTCATTGTTACTTTC 22354471 Query 188498 TATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTTCTTGCTCTG 188557 | ||||| | ||| || | |||| || || |||| |||||| |||| || | Sbjct 22354470 TGTGATGTACATATTGTCCTGCAAGATTGTATACTGACCCATGCAGTATTTCCTGATTCA 22354411 Query 188558 ACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGGATTGTTTGCT 188617 ||| | |||||| || || |||||||| | ||| ||| ||| | |||| | ||| || Sbjct 22354410 ACTGTGTATACTCTGCAGTCTAAGAGAGACTGCAGCAAATTTGGAGCAGGCCTATTTTCT 22354351 Query 188618 GCTTTCTGGATTTTAATTTTGTCAGGAGTCTTGA 188651 | ||| |||||||| | ||||||||| |||||| Sbjct 22354350 GGTTTGTGGATTTTGTTCTTGTCAGGAATCTTGA 22354317 >seq15 Length=85296676 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 51806376 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 51806435 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 51806436 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 51806495 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 51806496 CTGTTTCTTACACCATA 51806512 Score = 100 bits (110), Expect = 4e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || |||||||| || | || || || || | ||| || || || || || || | Sbjct 51811063 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 51811122 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||||||||||||||||| |||||| | ||| || || || || ||||| || | Sbjct 51811123 AATAAATGGTTTCAAAGATCTGCTTATTCAATAATTGGGCCTCTGGACTCTCAAAAGGGT 51811182 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62803 | | | |||||||| || || || | ||||| || ||||| || || || | ||| Sbjct 51811183 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 51811240 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||| ||||| |||||||| ||||||||||| || | || || || || | | Sbjct 51817469 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 51817528 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 51817529 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 51817588 Query 63383 CGGTTCCAAGTATATGGC 63400 ||||||| ||| || || Sbjct 51817589 AGGTTCCAGGTAAATAGC 51817606 >seq11 Length=107310763 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| ||||| | ||| || ||||||||||| || ||||| || || || || | Sbjct 87470288 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 87470347 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || |||||||||||||| ||||| ||||||||||||| Sbjct 87470348 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 87470407 Query 33724 C 33724 | Sbjct 87470408 C 87470408 Score = 105 bits (116), Expect = 8e-18 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||| ||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 87472031 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 87472090 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || || || || |||||||| | |||||||||||||| |||||| Sbjct 87472091 AATTTGGAAGCCATAGAAACAACGGGCCTCGGTAATCTGAACTTCT 87472136 >seq5 Length=121191424 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| | | | || | ||||||||||| ||||| |||||| ||| Sbjct 47889467 GTTACTTTCTATGATGTGTATGTTGTCCTGCAAGCTTTCATACTGACTTGTGCAGTATTT 47889526 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| || |||| |||| || |||||||||||||| ||| ||| | |||| Sbjct 47889527 CTTGGTTTGACTGTATATACTTTACAGTCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 47889585 Score = 91.5 bits (100), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 ||||| || |||||||||||||||||||||| ||||| ||||| || |||||||||||| Sbjct 47877807 TGCTCTTCTATCGAGGACGACTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGCGTGCAC 47877866 Query 188232 ATACGAATGG 188241 || ||||||| Sbjct 47877867 ATCCGAATGG 47877876 >seq30 Length=148823899 Score = 96.9 bits (106), Expect = 4e-15 Identities = 177/257 (69%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 31299 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 31356 ||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| ||||| Sbjct 142679615 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 142679558 Query 31357 TCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTT 31416 || | |||||| ||| |||| |||| | || ||||| || ||| ||| || | || Sbjct 142679557 TCTATTTCTGGGTAAGATATCCGTTCACGAATGAGCTGTGCAATTTGATCACCCTTTTTG 142679498 Query 31417 ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 31476 || | |||| | ||| ||| ||||| || | || || | ||||| ||||||||| Sbjct 142679497 ACTTCAAACTTCTCTTTGCCAAGATTAAACAGGACAACACCAACATTTCCTCTATAATCT 142679438 Query 31477 TCGTCTATTACACCGCCTCCTATATC---AATGCCTTTTAGGGACAGACCAGACCTAGGA 31533 || ||||||||||| |||||| ||| | | |||| | || ||||| | |||| Sbjct 142679437 TCATCTATTACACCAGCTCCTACATCTTTGAAGTGTTTTGCTGCCAAGCCAGAACGAGGA 142679378 Query 31534 GCTATTCTACCATAGCA 31550 || | ||| |||||||| Sbjct 142679377 GCCACTCTTCCATAGCA 142679361 >seq14 Length=84648390 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | || || ||||| |||||||| ||||| || || | || || Sbjct 64335761 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 64335702 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| || |||||||| Sbjct 64335701 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGGC 64335643 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 || ||||| ||||||| || ||||||| ||||||||||||||| ||||| |||||| | Sbjct 64326165 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGGG 64326106 Query 34140 TATTGGATTGGGAAAATAACAAATC 34164 || |||||||| || || ||||||| Sbjct 64326105 TACTGGATTGGAAAGATGACAAATC 64326081 >seq13 Length=84240350 Score = 82.4 bits (90), Expect = 1e-10 Identities = 174/257 (68%), Gaps = 12/257 (5%) Strand=Plus/Minus Query 31299 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 31356 ||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| ||||| Sbjct 34103538 TCCAGTGGAACCAAAGCCTCTTGAACCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 34103481 Query 31357 TCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTT 31416 || | |||||| ||| |||| |||| | | || ||||| || |||| | || || Sbjct 34103480 TCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCAAACTT-----TTG 34103426 Query 31417 ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 31476 || | |||| | ||| ||| ||||| || | || || | || || ||||||||| Sbjct 34103425 ACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTCCCTCTATAATCT 34103366 Query 31477 TCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGA 31533 || ||||| ||||| |||||| ||| || | || | | || ||||| | |||| Sbjct 34103365 TCATCTATGACACCAGCTCCTACATCTATGAAGGGTTCTGCTGCCAAGCCAGAACGAGGA 34103306 Query 31534 GCTATTCTACCATAGCA 31550 || | ||| |||||||| Sbjct 34103305 GCCACTCTTCCATAGCA 34103289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629792848168320