Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq11 134 2e-26 seq15 131 2e-25 seq30 116 5e-21 seq14 107 3e-18 seq13 98.7 1e-15 >seq11 Length=107310763 Score = 134 bits (148), Expect = 2e-26 Identities = 104/124 (84%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| ||||| ||||| |||||||||||||| || ||||| || || || || | Sbjct 87470288 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 87470347 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| |||||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 87470348 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 87470407 Query 50102 CAAC 50105 | || Sbjct 87470408 CTAC 87470411 Score = 105 bits (116), Expect = 1e-17 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||||| ||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 87472031 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 87472090 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || || || || |||||||| | |||||||||||||| |||||| Sbjct 87472091 AATTTGGAAGCCATAGAAACAACGGGCCTCGGTAATCTGAACTTCT 87472136 >seq15 Length=85296676 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 51806376 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 51806435 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||||||||| || ||||||||||| || || ||||| || || | | |||| Sbjct 51806436 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 51806495 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 51806496 CTGTTTCTTACACCATA 51806512 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| |||||||| ||||||||||| || | || || || |||| | ||| Sbjct 51817473 ACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 51817532 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| |||||| | | || || ||||||| ||| Sbjct 51817533 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGT 51817592 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 51817593 TCCAGGTAAATAGC 51817606 Score = 96.9 bits (106), Expect = 5e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || |||||||| || || | || | ||| | ||||| || || || || ||||| ||| Sbjct 51811065 TAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCATAA 51811124 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 ||||||||||| || |||| |||||| | ||| || ||| | || ||||| || || Sbjct 51811125 TAAATGGTTTCAAAGATCTGCTTATTCAATAATTGGGCCTCTGGACTCTCAAAAGGGTAC 51811184 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 79475 | | |||||||| || ||||| | ||||| || ||||| || || || | ||| Sbjct 51811185 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 51811240 >seq30 Length=148823899 Score = 116 bits (128), Expect = 5e-21 Identities = 179/255 (70%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762 |||||| || ||||| ||| | || || || || ||||| | ||| |||||||| Sbjct 142679615 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTCATCTAAAACTTGAACTTCCTC 142679556 Query 47763 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 47822 | |||||| ||| |||| |||| | || ||||| || ||| ||| ||| | || || Sbjct 142679555 TATTTCTGGGTAAGATATCCGTTCACGAATGAGCTGTGCAATTTGATCACCCTTTTTGAC 142679496 Query 47823 ATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 47882 | ||| | ||| ||| ||||| || | || || | ||||| ||||||||||| Sbjct 142679495 TTCAAACTTCTCTTTGCCAAGATTAAACAGGACAACACCAACATTTCCTCTATAATCTTC 142679436 Query 47883 GTCTATTACACCACCTCCTATATC---AATGCCTTTTAGTGACAGTCCAGACCTAGGAGC 47939 |||||||||||| |||||| ||| | | |||| || || ||||| | |||||| Sbjct 142679435 ATCTATTACACCAGCTCCTACATCTTTGAAGTGTTTTGCTGCCAAGCCAGAACGAGGAGC 142679376 Query 47940 TATTCTACCATAGCA 47954 | ||| |||||||| Sbjct 142679375 CACTCTTCCATAGCA 142679361 >seq14 Length=84648390 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || || || |||||||| |||||||| ||||| || || | || || Sbjct 64335761 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 64335702 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| ||||| | ||||| || || || ||||| ||||||||||| ||||||||||| Sbjct 64335701 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGGCC 64335642 Query 50104 ACAAGTCTCTCTCC 50117 || | ||||| || Sbjct 64335641 ACCACCCTCTCCCC 64335628 Score = 93.3 bits (102), Expect = 6e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||| ||||| ||||||| || ||||||| ||||||||||||||| ||||| |||||| | Sbjct 64326166 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGG 64326107 Query 50517 ATATTGGATTGGGAAAATAACAAATC 50542 || |||||||| || || ||||||| Sbjct 64326106 GTACTGGATTGGAAAGATGACAAATC 64326081 >seq13 Length=84240350 Score = 98.7 bits (108), Expect = 1e-15 Identities = 175/255 (69%), Gaps = 8/255 (3%) Strand=Plus/Minus Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762 |||||| || ||||| ||| | || || || || ||||| | ||| |||||||| Sbjct 34103538 TCCAGTGGAACCAAAGCCTCTTGAACCCCTTTCAGTGTCATCTAAAACTTGAACTTCCTC 34103479 Query 47763 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 47822 | |||||| ||| |||| |||| | | || ||||| || |||| | || || || Sbjct 34103478 TATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCAAACTT-----TTGAC 34103424 Query 47823 ATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 47882 | ||| | ||| ||| ||||| || | || || | || || ||||||||||| Sbjct 34103423 TTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTCCCTCTATAATCTTC 34103364 Query 47883 GTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGAGC 47939 ||||| |||||| |||||| ||| || | || | || || ||||| | |||||| Sbjct 34103363 ATCTATGACACCAGCTCCTACATCTATGAAGGGTTCTGCTGCCAAGCCAGAACGAGGAGC 34103304 Query 47940 TATTCTACCATAGCA 47954 | ||| |||||||| Sbjct 34103303 CACTCTTCCATAGCA 34103289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718240572036160