Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq8 89.7 4e-13 >seq8 Length=113384836 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42886 CCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAAT 42945 ||||| ||||| ||||| | ||| | ||| ||||||||||| ||||| || ||||| Sbjct 107174162 CCACGAAGTCTCAACACTAGATGAAGAGTAGACTCCTTTTGCATGTTGTAGTCAGACAAA 107174103 Query 42946 GTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACA 43005 |||| | | || |||| ||| ||||| ||||| |||| || || || || | || | Sbjct 107174102 GTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATT 107174043 Query 43006 CCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCT 43065 ||||| || || |||| | || || | | ||||| || | ||| || || Sbjct 107174042 CCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTACTGTATCCGAGGGCTCAACCTCG 107173983 Query 43066 ACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 | || || || || || || || || ||||| ||||| ||||| || Sbjct 107173982 AGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTT 107173936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381354986870352