Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq14 111 1e-19 >seq14 Length=84648390 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || ||||| || ||||| || || || ||||| || |||| ||| | Sbjct 64335763 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 64335704 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || ||||| || || |||||||| || || ||||| | Sbjct 64335703 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGG 64335644 Query 13293 CTATCAACCTTTCACC 13308 | | || ||| || || Sbjct 64335643 CCACCACCCTCTCCCC 64335628 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/97 (80%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 12970 TTCTAGTAA-CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCA 13028 |||| |||| |||||||||||| |||||||| || ||||||||||| | | |||| |||| Sbjct 64341241 TTCT-GTAAGCAATCTGTCAGCTACAAACTCAATATACTGTTTCATCAGAACACAATTCA 64341183 Query 13029 TTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAA 13065 |||| || | || |||| |||||||||||||| Sbjct 64341182 TTCCAATGAGGCCAACTGGCAAGGCTTCTGTTAAAAA 64341146 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 12801 TTTAAAAATCAATATCTAGAGAAAATACATCATC-GTCCTTATTTGACATAACAGACATT 12859 |||||||||| ||||| | || |||| ||| || || | || |||||| | | Sbjct 64346329 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTT-TCTGCCATAACTGCAAAA 64346271 Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||| || ||||| ||| ||||| || ||||||||||| ||||| ||||| ||| Sbjct 64346270 CGCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCCTCTAAGGAAATGTTT 64346211 Query 12920 TCCATAAAATCGAAAGGATTTT 12941 |||||||| || || ||||||| Sbjct 64346210 TCCATAAAGTCAAAGGGATTTT 64346189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430965885831888