Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq8 163 7e-35 seq19 147 5e-30 seq17 147 5e-30 seq3 127 5e-24 seq1 116 9e-21 seq14 114 3e-20 seq9 104 5e-17 seq13 87.8 4e-12 >seq8 Length=113384836 Score = 163 bits (180), Expect = 7e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| | ||||| || || || || || |||||||| | ||| | || ||||| Sbjct 107174147 ACTAGATGAAGAGTAGACTCCTTTTGCATGTTGTAGTCAGACAAAGTACATCCATCTTCC 107174088 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| || || || || || |||||||| |||||||| |||||||| Sbjct 107174087 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 107174028 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || |||||||||||||| ||||| || || ||||| || || || ||||| Sbjct 107174027 ATCTTGGCCTTTACATTTTCTACTGTATCCGAGGGCTCAACCTCGAGAGTGATGGTCTTC 107173968 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || || || || |||||||| ||| Sbjct 107173967 CCCGTCAGGGTCTTCACGAAAATCTGCATCTTG 107173935 >seq19 Length=64057457 Score = 147 bits (162), Expect = 5e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || |||||||| || || || ||| Sbjct 33854616 ATACCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCA 33854675 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| || || || || ||||| || |||||||| || ||||| Sbjct 33854676 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGG 33854735 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| |||||||| ||||| || || || || || | ||| || || || || Sbjct 33854736 GGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCC 33854795 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || ||||| || || || ||||| || || |||||||||||| Sbjct 33854796 ACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATTTTG 33854849 >seq17 Length=75158596 Score = 147 bits (162), Expect = 5e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || || ||||| ||||| | |||||||| || || || || Sbjct 55051462 GTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCGTCTTCCAGCTGCTTGCCG 55051403 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||| || |||||||| || ||||| || || ||||| |||||||| ||||| || || Sbjct 55051402 GCAAGGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 55051343 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || || ||||| || || || ||||| || || || ||| Sbjct 55051342 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTT 55051283 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || || |||||||||||| Sbjct 55051282 TTCACGAAGATCTGCATTTTG 55051262 Score = 111 bits (122), Expect = 4e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || ||||| | ||||||||| | ||| | || |||| Sbjct 41695923 ACAAGATGAAGAGTGGACTCCTTTTGAATGT-ATAGTCAGACAAAGTACATCCATCTTTC 41695865 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| | |||||||| || || || | || |||||||| |||||||| |||||||| Sbjct 41695864 AGTTGCCTCCCAGCAAAGATCAGTCTTTTCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 41695805 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 | ||| | ||||||||||||| |||||| || || |||| || || || ||||| Sbjct 41695804 ACCTTGACCTTTACATTTTCTATGGTATCCGAGGGCTCGACCT-GAGAGTGATGGTCTTC 41695746 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCA 104558 || | || || | || || ||||||| Sbjct 41695745 CCCATCAGCGTCTCCACGAAAATCTGCA 41695718 >seq3 Length=121430405 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| | || || || || ||||| || |||||||| | ||| || |||| Sbjct 20116388 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTTC 20116329 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| || || || || || |||||||| |||| ||| |||| ||| Sbjct 20116328 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCTTTCCTTATTCTGG 20116269 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| ||||| || || ||||| || || || | || Sbjct 20116268 ATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCGACCTCGAGAGTGATGATGTTC 20116209 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || | || || || || || |||||||| ||| Sbjct 20116208 CCTATCAGAGTCTTCACGAAAATCTGCATCTTG 20116176 >seq1 Length=158337067 Score = 116 bits (128), Expect = 9e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 104385 AGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGAT 104444 ||||||| | ||| | || ||||| ||||| || |||||||| || || || || || | Sbjct 46492854 AGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGT 46492913 Query 104445 CAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAG 104504 ||||||| |||||||| |||||||| ||||| || |||||||||||| ||||| | Sbjct 46492914 CAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGG 46492973 Query 104505 GTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 | || |||| | || || ||||| | || || || || | || |||||||| ||| Sbjct 46492974 GCTCCACCTTGACAGTGATGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCATCTTG 46493032 >seq14 Length=84648390 Score = 114 bits (126), Expect = 3e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || || ||| | || || ||||||||||||||||| || ||||| ||||| |||||||| Sbjct 64335628 GGGGAGAGGGTGGTGGCCTTTGCCGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCT 64335687 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||| | ||||||||||| || ||||| ||| | ||||| || || || | Sbjct 64335688 GCTATATTCTGGCTAAAGAAAAGAGGACTCATGCCTGGACTCACTTTTTCCAATGAGCTC 64335747 Query 269246 ATAAGCAGGGACGAAG 269261 || ||||| || |||| Sbjct 64335748 ATCAGCAGAGATGAAG 64335763 >seq9 Length=105708250 Score = 104 bits (114), Expect = 5e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | ||| ||||||||||| || || | || || | || || ||||| | Sbjct 19848147 TGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 19848088 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| || ||| | |||||| || || |||||||| | ||| |||||||| ||| Sbjct 19848087 AAGAAAAACAACCAAGTCTCTTTTCTTCACGTGTATCATCACTGTACCATGTTTACGTTG 19848028 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 | ||||| || ||||| ||| | ||||||||||| Sbjct 19848027 TGGTGGATTGGAATTAAGTGGGTTGCAGGAGGACA 19847993 >seq13 Length=84240350 Score = 87.8 bits (96), Expect = 4e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 65771 AAACTCCTCCTTACCGAAATTAAATATTAATATTCCAACATTACCTCTATAGTCTGAATC 65830 ||||| ||| || || |||||||| | | | |||||||| |||||||| ||| ||| Sbjct 34103420 AAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTCCCTCTATAATCTTCATC 34103361 Query 65831 TATAACACCAGCACCTACATCTATAAAGTAATTATAC-GCTAATCCAGATCGGGGAGCTA 65889 ||| |||||||| ||||||||||| ||| || | | || || ||||| || ||||| | Sbjct 34103360 TATGACACCAGCTCCTACATCTATGAAG-GGTTCTGCTGCCAAGCCAGAACGAGGAGCCA 34103302 Query 65890 TTCTACCATA 65899 ||| ||||| Sbjct 34103301 CTCTTCCATA 34103292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151352018793952