Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq16 127 2e-24 >seq16 Length=81724687 Score = 127 bits (140), Expect = 2e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 127171 GGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATGCCACAGGCA 127230 || |||||||| |||| || ||||| ||||| ||||| |||||||| ||||||||||| Sbjct 4405074 GGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAAGAGGTGATGCCACAGGCT 4405015 Query 127231 GAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGACA 127290 || || ||||| || ||||| || |||||||| || || ||||| || ||||||||||| Sbjct 4405014 GAGAACCACGGGCCTGACATCAAGGAACACGTGAACTCACTGGGGGAGAAGCTGAAGACC 4404955 Query 127291 TTGAGACTTCGACTGCGTCGCTG 127313 | | || || ||||| ||||| Sbjct 4404954 CTCCGGCTGCGGCTGCGGCGCTG 4404932 Score = 87.8 bits (96), Expect = 2e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 127315 CACCGCTTTCTCCCGTGCGAGAACAAGAGCAAGGCGGTGGAAAAGGTGAAGAGAGTGTTC 127374 || |||||||| || ||||| |||||||||||||||||||| |||||||||||||| ||| Sbjct 4403916 CATCGCTTTCTGCCCTGCGAAAACAAGAGCAAGGCGGTGGAGAAGGTGAAGAGAGTCTTC 4403857 Query 127375 AGCGAG 127380 || ||| Sbjct 4403856 AGTGAG 4403851 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 127379 AGCTTCAGGAAAGAGGCGTGTACAAGGCCATGAGTGAGTTTGACATATTCATCAACTACA 127438 |||| || || || || || ||||| |||||||||||||||||||| ||||||||||||| Sbjct 4402776 AGCTCCAAGAGAGGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 4402717 Query 127439 TCGAGACTTACATG 127452 | || || |||||| Sbjct 4402716 TAGAAACCTACATG 4402703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430037921390528