Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq24 87.8 1e-12 >seq24 Length=62714930 Score = 87.8 bits (96), Expect = 1e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| || || || |||| |||||||||||| || || || || |||| || Sbjct 35940509 CATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCTAAATC 35940450 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || || | |||| |||||| |||||| ||||||| ||| |||||||| || Sbjct 35940449 CCCTTCAGCTCTGTCGGAGAAGCCCAGGCCATCCAAGAAGTCTCGGGACCCATTGGCATC 35940390 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 ||| || || || ||||| ||||| || || | ||| ||||| || Sbjct 35940389 CCAAATTTTCACTCCCTTGGAAGAGAGTTCCTTAGCGTTGGTGGATCC 35940342 Score = 87.8 bits (96), Expect = 1e-12 Identities = 110/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || ||||||||| ||||| ||||| || || | |||||| Sbjct 35942858 GCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACACCCAGGCCCATG 35942799 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 || |||||||| |||||| | ||| || || | ||| | | |||||| ||||| || Sbjct 35942798 TC-CCCCGACCGCTGGTACAACTGGCAGGACAACTCCCCATTCACCACGTAGAACTGGCA 35942740 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | || || ||| || || || || || || Sbjct 35942739 GAGGGCGTGGCATGGGGGGAGGGCCATGAG 35942710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340124566777512