Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq19 96.9 4e-15 >seq19 Length=64057457 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/205 (71%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 164500 TTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACA 164559 |||||||| |||||| | ||||| || | ||| | || ||||| ||||||||||| || Sbjct 46154049 TTAGGCTGCAAACATGTTAAAGGCATCCTGTTATACGGGCCTCCAGGTTGCGGTAAGACC 46153990 Query 164560 TTAATGGCTCGATGCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAAT 164616 | |||||||| |||| |||| | || ||| | || || |||| | || || Sbjct 46153989 CTGTTGGCTCGACAGATTG-GCAAGATGTTGAATGCAAGAGAGCC--TAAAGTGGTCAAC 46153933 Query 164617 GGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTT 164676 || || ||| | | ||||||||||| || |||||||| ||||| || | || | ||| Sbjct 46153932 GGGCCGGAAATTCTCAACAAATATGTGGGAGAGTCAGAGGCTAACATTCGTAAACTCTTT 46153873 Query 164677 CAGGAGGCTGAAGAAGAACAAAAGA 164701 || |||||||| || |||| || Sbjct 46153872 GCTGATGCTGAAGAGGAGCAAAGGA 46153848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595848582230400