Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq5 122 9e-23 seq11 82.4 8e-11 >seq5 Length=121191424 Score = 122 bits (134), Expect = 9e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 130656 TCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCA 130715 || || || ||||||| | | ||||| ||||||| ||||||||| |||| | | Sbjct 100582866 TCCTCCTCAGTTTCAAACTGAGCAAGAACAGCTCCCACTGAAGTACAGGATGTCTGACTG 100582807 Query 130716 AATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCAT 130775 ||||||||||| ||||| ||||||||||| ||||| |||||| ||||||||||||||| Sbjct 100582806 AATGTCCAATTCTTTGAGTCTTCAGAAAAATAAAAACATTTACTCCCAAATCCAATCCAT 100582747 Query 130776 CCCTTTGGGCAAGTAACATA 130795 || |||||||| | ||||| Sbjct 100582746 CCTTTTGGGCAGCTGACATA 100582727 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || || || ||||||| | | ||||| ||||||| ||||||||| || | | Sbjct 100929724 AGCTCCTCCTCAGTTTCAAACTGAGCAAGAACAGCTCCCACTGAAGTACAGGATATCTGA 100929783 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||||| | ||| ||||||||||| ||||| || |||| |||||||||||| Sbjct 100929784 CTCAATGTCCAATTCTCTGAGTCTTCAGAAAAATAAAAACACTTATTCCCAAATCCAATC 100929843 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||||| |||||||| || ||||| Sbjct 100929844 CATCCTTTTGGGCAGGTGACATA 100929866 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || || || ||||||| | | ||||| ||| ||| ||||||||| || | | Sbjct 100639655 AGCTCCTCCTCAGTTTCAAACTGAGCAAGAACAGCTTCCAGTGAAGTACAGGATATCTGA 100639596 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||||| | ||| ||||||||||| ||||| || |||| |||||||||||| Sbjct 100639595 CTCAATGTCCAATTCTCTGACTCTTCAGAAAAATAAAAACACTTATTCCCAAATCCAATC 100639536 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||||| |||||||| || || || Sbjct 100639535 CATCCTTTTGGGCAGGTGACGTA 100639513 Score = 102 bits (112), Expect = 9e-17 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 130665 GTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCAAATGTCCAA 130724 ||||||| | | |||| ||| ||||||||||||| ||||| | | |||||||| Sbjct 100551387 GTTTCAAACTGAGCAAGGACAGCTTCCAATGAAGTACAGAATGTCTGACTGAATGTCCAG 100551328 Query 130725 TTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCATCCCTTTGGG 130784 || ||| ||||| ||||| ||||| |||||| ||||||||| |||||||| |||| | Sbjct 100551327 TTCCTTGTGTCTTCCGAAAAATAAAAACATTTACTTCCAAATCCTATCCATCCTTTTGAG 100551268 Query 130785 CAAGTAACATA 130795 || | |||||| Sbjct 100551267 CAGGGAACATA 100551257 >seq11 Length=107310763 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 21168 TTGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTC 21227 ||||||| | |||||| | ||||| || | ||||| || || || || || ||||| | Sbjct 87468488 TTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCC 87468547 Query 21228 CTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267 | |||| ||| ||| ||||||||| |||||||||||||| Sbjct 87468548 CCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTC 87468587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531879896298560