Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq15 140 4e-28 seq11 129 7e-25 seq14 102 1e-16 seq30 96.9 4e-15 seq13 82.4 1e-10 >seq15 Length=85296676 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 51806376 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 51806435 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 51806436 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 51806495 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 51806496 CTGTTTCTTACACCATA 51806512 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||| ||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 51817469 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 51817528 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 51817529 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 51817588 Query 63332 CGGTTCCAAGTATATGGC 63349 ||||||| ||| || || Sbjct 51817589 AGGTTCCAGGTAAATAGC 51817606 Score = 91.5 bits (100), Expect = 2e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 51811063 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 51811122 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694 ||||||||||||| ||||||| |||||| | ||| || || | || ||||| || | Sbjct 51811123 AATAAATGGTTTCAAAGATCTGCTTATTCAATAATTGGGCCTCTGGACTCTCAAAAGGGT 51811182 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62752 | | | |||||||| || || || | ||||| || ||||| || || || | ||| Sbjct 51811183 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 51811240 >seq11 Length=107310763 Score = 129 bits (142), Expect = 7e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| ||||| ||||| |||||||||||||| || ||||| || || || || | Sbjct 87470288 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 87470347 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || || ||||||||||| ||||| ||||||||||||| Sbjct 87470348 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 87470407 Query 33446 C 33446 | Sbjct 87470408 C 87470408 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||||| ||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 87472031 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 87472090 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || || || || |||||||| | |||||||||||||| |||||| | ||| || || Sbjct 87472091 AATTTGGAAGCCATAGAAACAACGGGCCTCGGTAATCTGAACTTCTTGGCTAAACCGCTC 87472150 Query 33684 CGCC 33687 | || Sbjct 87472151 CACC 87472154 >seq14 Length=84648390 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || || || |||||||| |||||||| ||||| || || | || || Sbjct 64335761 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 64335702 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| || |||||||| Sbjct 64335701 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGGC 64335643 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATA 33860 ||| ||||| ||||||| || ||||||| ||||||||||||||| ||||| |||||| Sbjct 64326166 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGG 64326107 Query 33861 ATATTGGATTGGGAAAATAACAAATC 33886 || |||||||| || || ||||||| Sbjct 64326106 GTACTGGATTGGAAAGATGACAAATC 64326081 >seq30 Length=148823899 Score = 96.9 bits (106), Expect = 4e-15 Identities = 177/257 (69%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 31047 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATTTGTACTATCTAGAGATTGTACTTCT 31104 ||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| ||||| Sbjct 142679615 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 142679558 Query 31105 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTT 31164 || | |||||| ||| |||| |||| | || ||||| || ||| ||| || | || Sbjct 142679557 TCTATTTCTGGGTAAGATATCCGTTCACGAATGAGCTGTGCAATTTGATCACCCTTTTTG 142679498 Query 31165 ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 31224 || | |||| | ||| ||| ||||| || | || || | ||||| ||||||||| Sbjct 142679497 ACTTCAAACTTCTCTTTGCCAAGATTAAACAGGACAACACCAACATTTCCTCTATAATCT 142679438 Query 31225 TCGTCTATTACACCGCCTCCTATATC---AATGCCTTTTAGGGACAGACCAGACCTAGGA 31281 || ||||||||||| |||||| ||| | | |||| | || ||||| | |||| Sbjct 142679437 TCATCTATTACACCAGCTCCTACATCTTTGAAGTGTTTTGCTGCCAAGCCAGAACGAGGA 142679378 Query 31282 GCTATTCTACCATAGCA 31298 || | ||| |||||||| Sbjct 142679377 GCCACTCTTCCATAGCA 142679361 >seq13 Length=84240350 Score = 82.4 bits (90), Expect = 1e-10 Identities = 174/257 (68%), Gaps = 12/257 (5%) Strand=Plus/Minus Query 31047 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATTTGTACTATCTAGAGATTGTACTTCT 31104 ||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| ||||| Sbjct 34103538 TCCAGTGGAACCAAAGCCTCTTGAACCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 34103481 Query 31105 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTT 31164 || | |||||| ||| |||| |||| | | || ||||| || |||| | || || Sbjct 34103480 TCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCAAACTT-----TTG 34103426 Query 31165 ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 31224 || | |||| | ||| ||| ||||| || | || || | || || ||||||||| Sbjct 34103425 ACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTCCCTCTATAATCT 34103366 Query 31225 TCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGA 31281 || ||||| ||||| |||||| ||| || | || | | || ||||| | |||| Sbjct 34103365 TCATCTATGACACCAGCTCCTACATCTATGAAGGGTTCTGCTGCCAAGCCAGAACGAGGA 34103306 Query 31282 GCTATTCTACCATAGCA 31298 || | ||| |||||||| Sbjct 34103305 GCCACTCTTCCATAGCA 34103289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622922718175040