Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq17 109 4e-19 seq19 96.9 3e-15 >seq17 Length=75158596 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| |||||||| || || ||||||||||| | Sbjct 53142738 CCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 53142679 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| ||||| || ||| | || |||| ||| ||||| || Sbjct 53142678 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 53142619 Query 16828 CACGCCCTCTTTGTC-GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||||||||| | | |||| ||| || | | | ||||| | ||||||| Sbjct 53142618 GATGCCCTCTTTGTCTTGGATCTTGC-CCTTGACGTTCTCGATGGTGTCACTGGGCTCCA 53142560 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||||||| ||||||| || || || || |||||||| Sbjct 53142559 CCTCCAGGGTGATGGTTTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53142511 Score = 107 bits (118), Expect = 2e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| ||||||||||| || ||||||||||| | Sbjct 53142966 CCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 53142907 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| ||||| || ||| | || |||| ||| ||||| || Sbjct 53142906 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 53142847 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||||||||| || || || ||| || | | | ||||| | ||||||| Sbjct 53142846 GATGCCCTCTTTGTCTTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCACTGGGCTCC 53142789 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || ||||||| || || || || |||||||| Sbjct 53142788 ACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53142739 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| |||||||| || || ||||||||||| | Sbjct 53143194 CCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 53143135 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| ||||| || ||| | || |||| ||| ||||| || Sbjct 53143134 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 53143075 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||||||||| || || || ||| || | | | ||||| | ||||||| Sbjct 53143074 GATGCCCTCTTTGTCTTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCACTGGGCTCC 53143017 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || ||||||| || || || || |||||||| Sbjct 53143016 ACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53142967 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| |||||||| || || ||||||||||| | || ||| | || Sbjct 53143406 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 53143347 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| ||||| || ||| | || |||| ||| ||||| || | |||||||||||| Sbjct 53143346 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 53143287 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| | ||||||| |||| ||||||| Sbjct 53143286 TGGATCTTGGC--CTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGG 53143229 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||||| || || || || |||||||| Sbjct 53143228 TCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53143195 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || ||||| || || |||||||| || | | || | |||| Sbjct 55051477 AGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCGTCT 55051418 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| || |||| ||| ||||| || | ||| || || || Sbjct 55051417 TCCAGCTGCTTGCCGGCAAGGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 55051358 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | ||||| | ||||||| |||| |||||||| Sbjct 55051357 TGGATCTTGGC--CTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGG 55051300 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || |||||||| ||||| || || |||||||||||| Sbjct 55051299 TCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATTTTG 55051262 >seq19 Length=64057457 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || ||||| || || |||||||| || | | || | | || Sbjct 33854406 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 33854465 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| | || |||| ||| ||||| || | |||||| || || Sbjct 33854466 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCC 33854525 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | ||||| | ||||||| ||||| |||||||| Sbjct 33854526 TGGATCTTGGC--CTTCACGTTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGG 33854583 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || |||||||| || || || ||||||||||| Sbjct 33854584 TCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 33854617 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || ||||| || || |||||||| || | | || | | || Sbjct 33854634 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 33854693 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| | || |||| ||| ||||| || | ||| || || || Sbjct 33854694 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 33854753 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | ||||| | ||||||| |||| |||||||| Sbjct 33854754 TGGATCTTGGC--CTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGG 33854811 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || |||||||| ||||| || || |||||||||||| Sbjct 33854812 TCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATTTTG 33854849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405072478040560