Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq15 140 4e-28 seq11 123 3e-23 seq14 102 1e-16 seq30 91.5 2e-13 >seq15 Length=85296676 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 51806376 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 51806435 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 51806436 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 51806495 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 51806496 CTGTTTCTTACACCATA 51806512 Score = 109 bits (120), Expect = 7e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| |||| ||| || ||||||||||| | || || ||||| || || || || || | Sbjct 51830885 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 51830944 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | ||||| | || || ||| | || || |||| ||| |||| Sbjct 51830945 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCA 51831004 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAG 63977 ||| || || || || ||| | |||| |||||||| |||||||||| Sbjct 51831005 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACCTTCATAG 51831052 Score = 96.9 bits (106), Expect = 4e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 51811063 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 51811122 Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549 ||||||||||||| ||||||| |||||| | ||| || || | || ||||| || | Sbjct 51811123 AATAAATGGTTTCAAAGATCTGCTTATTCAATAATTGGGCCTCTGGACTCTCAAAAGGGT 51811182 Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62607 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| Sbjct 51811183 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 51811240 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||| ||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 51817469 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 51817528 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 51817529 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 51817588 Query 63187 CGGTTCCAAGTATATGGC 63204 ||||||| ||| || || Sbjct 51817589 AGGTTCCAGGTAAATAGC 51817606 >seq11 Length=107310763 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||||||||| ||||| | ||| |||||||||||||| || ||||| || || || || | Sbjct 87470288 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 87470347 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| |||||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 87470348 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 87470407 Query 32803 C 32803 | Sbjct 87470408 C 87470408 Score = 105 bits (116), Expect = 8e-18 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 87472031 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 87472090 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 ||||| || || ||||| || | |||||||||||||| |||||| Sbjct 87472091 AATTTGGAAGCCATAGAAACAACGGGCCTCGGTAATCTGAACTTCT 87472136 >seq14 Length=84648390 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || ||||| || || | || |||||||| |||||||| ||||| || || | || || Sbjct 64335761 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 64335702 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 64335701 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGGC 64335643 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218 || ||||| ||||||| || ||||||| ||||||||||||||| ||||| |||||| | Sbjct 64326165 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGGG 64326106 Query 33219 TATTGAATTGGAAAAATAACAAATC 33243 || || |||||||| || ||||||| Sbjct 64326105 TACTGGATTGGAAAGATGACAAATC 64326081 >seq30 Length=148823899 Score = 91.5 bits (100), Expect = 2e-13 Identities = 176/257 (68%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 30404 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGATATTGTACTTCT 30461 ||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| ||||| Sbjct 142679615 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 142679558 Query 30462 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 30521 | | |||||| ||| |||| |||| | || ||||| || ||| ||| ||| | || Sbjct 142679557 TCTATTTCTGGGTAAGATATCCGTTCACGAATGAGCTGTGCAATTTGATCACCCTTTTTG 142679498 Query 30522 ACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 30581 || | || | ||| ||| ||||| || | || || | |||||| ||||||||| Sbjct 142679497 ACTTCAAACTTCTCTTTGCCAAGATTAAACAGGACAACACCAACATTTCCTCTATAATCT 142679438 Query 30582 TCGTCTATTACACCGCCTCCTATATC---AATGCCTTTTAGGGACAGACCAGACCTAGGA 30638 || ||||||||||| |||||| ||| | | |||| | || ||||| | |||| Sbjct 142679437 TCATCTATTACACCAGCTCCTACATCTTTGAAGTGTTTTGCTGCCAAGCCAGAACGAGGA 142679378 Query 30639 GCTATTCTACCATAGCA 30655 || | ||| |||||||| Sbjct 142679377 GCCACTCTTCCATAGCA 142679361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633607098262400