Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq19 183 6e-41 seq17 178 2e-39 seq18 116 7e-21 seq12 111 3e-19 seq23 86.0 1e-11 >seq19 Length=64057457 Score = 183 bits (202), Expect = 6e-41 Identities = 166/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| ||||| || || || | |||||||| Sbjct 33853953 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 33854012 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| ||||| || ||||| || || ||||| || |||||||||||||| || || Sbjct 33854013 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 33854072 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| ||| |||||||||||| | || ||||||| ||||||||| || Sbjct 33854073 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 33854132 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| ||||| |||||||| Sbjct 33854133 CCGGTCAGGGTCTTCACGAAGATCTGCAT 33854161 Score = 183 bits (202), Expect = 6e-41 Identities = 166/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| ||||| || || || | |||||||| Sbjct 33854409 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 33854468 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| ||||| || ||||| || || |||||||| |||||||| ||||| || || Sbjct 33854469 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGG 33854528 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| ||| |||||||||||| | || ||||||| ||||||||| || Sbjct 33854529 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 33854588 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| ||||| |||||||| Sbjct 33854589 CCGGTCAGGGTCTTCACGAAAATCTGCAT 33854617 Score = 179 bits (198), Expect = 7e-40 Identities = 165/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| ||||| || || || | |||||||| Sbjct 33854181 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 33854240 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| ||||| || ||||| || || ||||| || |||||||||||||| || || Sbjct 33854241 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 33854300 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| ||| |||||||||||| | || || |||| ||||||||| || Sbjct 33854301 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 33854360 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| ||||| |||||||| Sbjct 33854361 CCGGTCAGGGTCTTCACGAAGATCTGCAT 33854389 Score = 178 bits (196), Expect = 2e-39 Identities = 167/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| ||||| || || || | |||||||| Sbjct 33854637 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 33854696 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| ||||| || ||||| || || ||||| || |||||||||||||| || || Sbjct 33854697 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 33854756 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| ||| |||||||||||| | || || |||| ||||||||| || Sbjct 33854757 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 33854816 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || || ||||| || ||||| ||||||||| || Sbjct 33854817 CCGGTCAGGGTTTTCACGAAGATCTGCATTTTG 33854849 >seq17 Length=75158596 Score = 178 bits (196), Expect = 2e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| || ||||||||||| |||||||| || || || || || | | Sbjct 53142728 AGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGC 53142669 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| |||||||| || || || || || ||||| || || ||||| || Sbjct 53142668 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCT 53142609 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| ||||| |||||||| |||||||||||| | || || |||| |||| Sbjct 53142608 TTGTCTTGGATCTTGCCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 53142549 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| || || | |||||| ||||| |||||||| Sbjct 53142548 ATGGTTTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53142511 Score = 178 bits (196), Expect = 2e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| || ||||||||||| |||||||| || || || || || | | Sbjct 53143184 AGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGC 53143125 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| |||||||| || || || || || ||||| || || ||||| || Sbjct 53143124 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCT 53143065 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| ||||| ||||||||| |||||||||||| | || || |||| |||| Sbjct 53143064 TTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 53143005 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || | |||||| ||||| |||||||| Sbjct 53143004 ATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53142967 Score = 172 bits (190), Expect = 1e-37 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| || |||||||| || |||||||| || || || || || | | Sbjct 53142956 AGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 53142897 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| |||||||| || || || || || ||||| || || ||||| || Sbjct 53142896 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCT 53142837 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| ||||| ||||||||| |||||||||||| | || || |||| |||| Sbjct 53142836 TTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 53142777 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || | |||||| ||||| |||||||| Sbjct 53142776 ATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53142739 Score = 172 bits (190), Expect = 1e-37 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| || ||||||||||| |||||||| || || || || || | | Sbjct 53143412 AGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGC 53143353 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| |||||||| || || || || || ||||| || || ||||| || Sbjct 53143352 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCT 53143293 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| ||||| ||||||||| |||||||||||| | || || |||| ||| Sbjct 53143292 TTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTG 53143233 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || | |||||| ||||| |||||||| Sbjct 53143232 ATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53143195 Score = 168 bits (186), Expect = 1e-36 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| ||||| || || || | || ||||| Sbjct 55051474 ACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCGTCTTCC 55051415 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| ||||| | ||||| || || ||||| || |||||||||||||| || || Sbjct 55051414 AGCTGCTTGCCGGCAAGGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 55051355 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| ||| |||||||||||| | || || |||| ||||||||| || Sbjct 55051354 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 55051295 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || || ||||| || ||||| ||||||||| || Sbjct 55051294 CCGGTCAGGGTTTTCACGAAGATCTGCATTTTG 55051262 >seq18 Length=66004023 Score = 116 bits (128), Expect = 7e-21 Identities = 169/235 (72%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 || || ||||||| | | | ||| |||||||| || ||||||||| | ||||||| | Sbjct 4961373 TTAAAATTCCTCCCCTCAAGTGCAGGACCAAGTGCAGAGTGGACTCTCT--GGATGTTGT 4961316 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | || || || || | ||||||||| | ||| ||||| || || | || || || |||| Sbjct 4961315 ATTCAGACAGGGTGCACCCATCTTC-AGCTGTTTCCCTGCAAAGGTCAGCCTCTGCTGGT 4961257 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | | || ||||| || |||||||||||||| |||||||| |||||||| || | Sbjct 4961256 CTAGGGGGATGCCCTCTTTGTCTTGAATCTTGGCCTTGACATTCTCGATGGGATCACTGG 4961197 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||| || | ||| | || || |||||| | ||| |||||||| Sbjct 4961196 GCTCCACCTCCAGGGGGTTGG-TCTTATGGTCTAGGTCTTCATGAAGATCTGCAT 4961143 >seq12 Length=91163125 Score = 111 bits (122), Expect = 3e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| ||||| || || || |||||||| Sbjct 5439568 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGTGGCCATCTTCC 5439627 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| ||||| || ||||| | || ||||| || |||||||||||||| || || Sbjct 5439628 AGCTGCTTGCCGGCAAAGATGAGCTTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGG 5439687 Query 68373 ATCTTTGCCTT 68383 ||||| ||||| Sbjct 5439688 ATCTTGGCCTT 5439698 >seq23 Length=52530062 Score = 86.0 bits (94), Expect = 1e-11 Identities = 69/81 (85%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 268403 GGGCTCTCGTGGTTGAAGAGGATGCCGTTGCAC-GCGAACATGCCATATGCCTCACGGTA 268461 ||||||||||||||||||||||||||||| ||| ||||||| | |||||||| ||| | Sbjct 51211591 GGGCTCTCGTGGTTGAAGAGGATGCCGTT-CACTGCGAACAGGTTGTATGCCTCCCGGAA 51211533 Query 268462 GTTCACGACCGTCCAGTATGC 268482 |||||| || ||||||| || Sbjct 51211532 GTTCACCACGATCCAGTACGC 51211512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921586180239680