Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq8 122 2e-22 seq19 120 7e-22 seq17 113 1e-19 seq1 86.0 1e-11 >seq8 Length=113384836 Score = 122 bits (134), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 288248 CACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGA 288307 |||| || ||||| | || ||||||| || || ||||| || || ||||| | | Sbjct 107174164 CACCACGAAGTCTCAACACTAGATGAAGAGTAGACTCCTTTTGCATGTTGTAGTCAGACA 107174105 Query 288308 GCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCTG 288364 || | ||| ||||| | ||| || || || |||||||| | |||| | || | | Sbjct 107174104 AAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA---G 107174048 Query 288365 GGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTA 288424 | |||||||| ||||||||||| || || || || ||||||| | ||| | || | Sbjct 107174047 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTACTGTATCCGAGGGCTCAA 107173988 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| ||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct 107173987 CCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 107173939 >seq19 Length=64057457 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | || || || || ||| Sbjct 33853971 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 33854030 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || ||||| ||||||||||| || || |||||||| Sbjct 33854031 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 33854090 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || ||||| || ||||| ||||| |||||||| ||||| ||| Sbjct 33854091 TCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 33854150 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 33854151 AAGATCTGCAT 33854161 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | || || || || ||| Sbjct 33854199 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 33854258 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || ||||| ||||||||||| || || |||||||| Sbjct 33854259 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 33854318 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| |||||||| ||||| ||| Sbjct 33854319 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 33854378 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 33854379 AAGATCTGCAT 33854389 Score = 113 bits (124), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | || || || || ||| Sbjct 33854427 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 33854486 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| || || ||| || || || ||||||||||| || || |||||| Sbjct 33854487 ATGAGCCTCTGCTGG---TCGGGGGGAATGCCCTCCTTATCCTGGATCTTGGCCTTCACG 33854543 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || | || ||||| || ||||| ||||| |||||||| ||||| Sbjct 33854544 TTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 33854603 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 33854604 ACGAAAATCTGCAT 33854617 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | || || || || ||| Sbjct 33854655 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 33854714 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || ||||| ||||||||||| || || |||||||| Sbjct 33854715 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 33854774 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| |||||||| || || ||| Sbjct 33854775 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACG 33854834 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 33854835 AAGATCTGCATTTTG 33854849 >seq17 Length=75158596 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| |||||||| | || || || || | | Sbjct 55051456 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAGG 55051397 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || ||||| ||||||||||| || || |||||||| Sbjct 55051396 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 55051337 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| |||||||| || || ||| Sbjct 55051336 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACG 55051277 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 55051276 AAGATCTGCATTTTG 55051262 >seq1 Length=158337067 Score = 86.0 bits (94), Expect = 1e-11 Identities = 117/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 288315 TCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCTGGGATTCC 288371 ||| ||||| | ||| || || || |||||||| | |||| | || | || ||||| Sbjct 46492870 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA---GGAATTCC 46492926 Query 288372 TTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAG 288431 ||| ||||||||||| || || || || |||||| | | ||| | || || | || Sbjct 46492927 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCCACCTTGAC 46492986 Query 288432 CGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| |||||| | ||||| ||||| | ||| |||||||| Sbjct 46492987 AGTGATGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCAT 46493028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179606880571632