Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq8 91.5 1e-13 >seq8 Length=113384836 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| |||| ||| | | ||||||||||| ||||||||||| || ||||| || Sbjct 107174151 CAACACTAGATGAAGAGTAGACTCCTTTTGCATGTTGTAGTCAGACAAAGTACATCCATC 107174092 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || ||||| || || | | |||| || | || ||||| ||||| || ||||| || || Sbjct 107174091 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 107174032 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || |||| | ||| || || || | | ||| ||||||| || | || Sbjct 107174031 CTGGATCTTGGCCTTTACATTTTCTACTGTATCCGAGGGCTCAACCTCGAGAGTGATGGT 107173972 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || ||||| || || || ||||||||||| Sbjct 107173971 CTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 107173939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496242896887680