Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq8 93.3 3e-14 >seq8 Length=113384836 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14951 CACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGA 15010 |||| || | ||| || |||| |||||| ||||| || ||||| |||||||| || | Sbjct 107174164 CACCACGAAGTCTCAACACTAGATGAAGAGTAGACTCCTTTTGCATGTTGTAGTCAGACA 107174105 Query 15011 GAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAA 15070 | | | | ||||| | ||| |||||||| | |||| | || ||||| |||| Sbjct 107174104 AAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAA 107174045 Query 15071 TTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGT 15130 |||||||||| || || ||| |||||| |||||| ||||| || || | Sbjct 107174044 TTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTACTGTATCCGAGGGCTCAACCT 107173985 Query 15131 CTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | | || ||||| || || ||||| || || || ||||| ||||| || Sbjct 107173984 CGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTT 107173936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357378305632040