Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq16 158 2e-33 seq11 116 5e-21 >seq16 Length=81724687 Score = 158 bits (174), Expect = 2e-33 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785 |||||| | | || || ||||||||||| || |||||||| || || || ||||| || Sbjct 69267122 GATTAGCCTGCTTGTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAG 69267181 Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845 ||||| || || ||||||||||| | ||||| |||||||| |||||||| | ||| || Sbjct 69267182 CACATCACACACTCTGTTGTGTTCCCGTAGCCAAATGGTGGCATACATCATCAGACCAGG 69267241 Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGC 9905 ||| | |||||| ||||| | ||||| ||||| || | || || || | |||| Sbjct 69267242 CACCAGACCAAAGACTTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAACATGAGGCGG 69267301 Query 9906 ATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 || | ||| | ||||| || |||||||| ||||| |||||||| || || | ||| Sbjct 69267302 GTAGATCATTTCGACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATTAAT 69267358 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 ||| |||||||| | ||| | |||||||| |||||||| | | ||| ||| | || Sbjct 69268150 TCTCACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 69268209 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 |||||| || || ||||| || | || || || |||||||| || |||||||||||||| Sbjct 69268210 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCAGATTTGTGCCCTGGGGATC 69268269 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 || || || | || | | || ||||| | ||||| | | ||||||| || || Sbjct 69268270 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAACTTCTTTTGAATCAGGAAG 69268326 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | || || ||||||||| ||| || ||||| |||| ||| ||| Sbjct 69268982 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGGCACAGGAGGAAGAGCTCTGGTA 69269041 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 ||||| || || || ||||| ||||||||||| || |||| || | | || || Sbjct 69269042 TAATAAGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCTGTAGTGCACATTATAAGTT 69269101 Query 10507 GGGGGACTGTCAATCA 10522 || ||||| ||||||| Sbjct 69269102 GGTGGACTCTCAATCA 69269117 Score = 89.7 bits (98), Expect = 7e-13 Identities = 127/177 (72%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 9545 GAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTC 9604 |||| | ||||||| || | ||||||| ||||||| || || ||||| || || || | Sbjct 69266657 GAAAGACGTCAGGCAGAAGGGGATGCCAGTGGTAGAGCGTGTTAAACTCAGCAGCAATAC 69266716 Query 9605 GGTTCTGGTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAA 9662 ||||||||||||| || | ||| ||| || | ||| |||||||| | || | ||| Sbjct 69266717 GGTTCTGGTACTGGAACTGTTGGT--TGAAAAGCAGCTCTGGGTCAAACTTCAGTTTGAA 69266774 Query 9663 GTGGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 ||| || || || | ||||| || || | | || | ||| ||||| ||||| || Sbjct 69266775 GTGATAGCCACTCAAGTGCTGTACGTAGTCTTCAATCACAATCTTAATAGTTTCTCC 69266831 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 9963 AACCTGATACTTCATCTTCCCATCCTTGAACAGACGCAGCTTATGCTGCTTCTCCAACGT 10022 ||||||||| ||||| || ||||||||||| || |||||||||||||| |||| || | Sbjct 69267470 AACCTGATATTTCATTTTTCCATCCTTGAAAAGGCGCAGCTTATGCTGTCTCTCTAAAGA 69267529 Query 10023 TTCGCCGTAGATGTGACTGAGATCGACCT 10051 ||| || || |||||||| | || |||| Sbjct 69267530 TTCACCATAAATGTGACTTAAGTCCACCT 69267558 >seq11 Length=107310763 Score = 116 bits (128), Expect = 5e-21 Identities = 176/248 (71%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || || | || || || || || || || || ||||| | ||||||||| Sbjct 93244160 GTGGCCGTCTTGACAAGGTTGAAGCCCACATCACCACCAAATGTGCTTGCCTTCCAGTAC 93244101 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || || |||||| |||| | | ||| || || | |||||| |||||||||| || Sbjct 93244100 TCTGGAGAACAGATGGGGTTCCCTAAGAGGCCCTTAAGGGAAAAAGGAGCCCCCATTTCT 93244041 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTA 9111 || || ||||| || ||||||| ||| | || || | || | |||| | ||| Sbjct 93244040 ATCATACTCTCCCCAAAGATGGAGTTCGGATGGCACTTCTCAA-GAAGTAGCCCCGGGTA 93243982 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || ||| | ||| |||| ||| ||||| || | |||||||| || || ||||||||||| Sbjct 93243981 GAATTCCAAAGCATCGATGTCTCCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTC 93243922 Query 9172 ACCTACAA 9179 ||| ||| Sbjct 93243921 CCCTGCAA 93243914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723699557489600