Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq19 131 2e-25 seq17 129 6e-25 >seq19 Length=64057457 Score = 131 bits (144), Expect = 2e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| ||||| || || ||||| ||||||||| | || || ||| || Sbjct 33854848 AAAATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 33854789 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | || | || |||| || || || || |||||| | || Sbjct 33854788 AGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGA 33854730 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| ||||||| | || ||||| |||||||| || | ||||| || || || Sbjct 33854729 CCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTA 33854670 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| || || |||| ||||| |||| || ||| |||| || || Sbjct 33854669 CAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTCCGTCTGAGGGGTGG 33854619 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 33854617 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 33854558 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || ||||| |||||| ||||||| Sbjct 33854557 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCA 33854499 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||| | || ||||| |||||||| || | ||||| || || ||||| Sbjct 33854498 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 33854439 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || |||| ||||| |||| || ||| |||| || || Sbjct 33854438 CATCCAGAAAGAGTCGACCCTGCACCTGGTCCTCCGTCTGAGGGGTGG 33854391 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 33854161 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 33854102 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || |||||| | ||||| Sbjct 33854101 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCA 33854043 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||| | || ||||| |||||||| || | ||||| || || ||||| Sbjct 33854042 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 33853983 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || || |||| ||||| |||| || ||| |||| || ||| Sbjct 33853982 CATCCAGAAAGAGTCGACCCTGCACCTGGTCCTTCGTCTGAGGGGTGGC 33853934 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 33854389 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 33854330 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || |||||| | ||||| Sbjct 33854329 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCA 33854271 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||| | || ||||| |||||||| || | ||||| || || ||||| Sbjct 33854270 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 33854211 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || |||| ||||| |||| || ||| |||| || || Sbjct 33854210 CATCCAGAAAGAGTCGACCCTGCACCTGGTCCTCCGTCTGAGGGGTGG 33854163 >seq17 Length=75158596 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||||||||||||| | || || ||| ||| Sbjct 53142511 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAAACCATCACCCTGGAGGTGGAGCCCAGT 53142570 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| || ||| | ||||| Sbjct 53142571 GACACCATCGAGAACG-TCAAGGGCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 53142629 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || ||||||||||| || | ||||||||| |||||||| Sbjct 53142630 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 53142689 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || ||||| |||| || || | ||||| || Sbjct 53142690 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 53142737 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| ||||||||| | || || ||| ||| Sbjct 53142739 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 53142798 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| || ||| | ||||| Sbjct 53142799 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 53142857 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || ||||||||||| || | ||||||||| |||||||| Sbjct 53142858 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 53142917 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || ||||| |||| || || | ||||| || Sbjct 53142918 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 53142965 Score = 127 bits (140), Expect = 2e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| ||||| || || ||||| ||||||||| | || || ||| || Sbjct 55051263 AAAATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 55051322 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | || | || |||| || || || || |||||| | || Sbjct 55051323 AGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGA 55051381 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| ||||||| || ||||| |||||||| |||| ||||| || || || Sbjct 55051382 CCAGCAGAGGCTCATCCTTGCCGGCAAGCAGCTGGAAGACGGCCGCACTCTTTCTGATTA 55051441 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| || || | || ||||| |||| || ||| |||| || ||| Sbjct 55051442 CAACATCCAGAAAGAGTCAACCCTGCACCTGGTCCTCCGTCTGAGGGGTGGC 55051493 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| ||||||||| | || || ||| ||| Sbjct 53142967 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 53143026 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| || ||| | ||||| Sbjct 53143027 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 53143085 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || ||||||||||| || | ||||||||| |||||||| Sbjct 53143086 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 53143145 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || ||||| |||| || || | ||||| || Sbjct 53143146 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 53143193 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| |||||||| | || || ||| ||| Sbjct 53143195 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 53143254 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| || ||| | ||||| Sbjct 53143255 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 53143313 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || ||||||||||| || | ||||||||| |||||||| Sbjct 53143314 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 53143373 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| || || | || ||||| |||| || || Sbjct 53143374 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCG 53143409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500153143208960