Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq11 86.0 7e-12 seq7 86.0 7e-12 >seq11 Length=107310763 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 117044 ||| || || |||| ||||||||||||||| |||||||| || || ||| |||||||| Sbjct 87468510 ATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCAT 87468569 Query 117045 AAAGTCAAATGGATT 117059 ||||||||||||||| Sbjct 87468570 AAAGTCAAATGGATT 87468584 >seq7 Length=112638659 Score = 86.0 bits (94), Expect = 7e-12 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 |||||||||||||||| || | ||||| || ||||| | ||| ||| |||| | Sbjct 8975012 GCATCAATCTCATCAACAAACAAGATACAGGGAGCATTTTTCCAGGCCATTGCAAACATG 8974953 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491 || |||||| | ||| |||| |||||||||||||| || | | | ||| Sbjct 8974952 TCATGAACCCAAGCTGGGCCAACACGAACAAACATCTCCAGGAACTCAG-ACCCATTCAT 8974894 Query 9492 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 | ||||||||| ||| || || ||| || || || |||||| ||||| || || Sbjct 8974893 GGTGATGAAGGGCACACCAGCCTCCCCCATGATTGCCTTGGGGAGAAGCGTCTTGCCAGT 8974834 Query 9551 ACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCA 9596 ||| || ||| | ||| ||||| ||| |||||| ||||| ||| Sbjct 8974833 ACCAGGAGGACCTGTGAGCAGGGCTCCCTTTGGAATTTTGGCCCCA 8974788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589957613754560