Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq17 150 4e-31 seq19 143 6e-29 seq3 105 1e-17 seq18 98.7 2e-15 seq12 95.1 3e-14 seq2 91.5 3e-13 >seq17 Length=75158596 Score = 150 bits (166), Expect = 4e-31 Identities = 169/225 (75%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| |||||||||||||| || || ||||| || | || || Sbjct 53143188 TCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGT 53143129 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| ||||| || || || ||||| || | || |||||||| || ||||| Sbjct 53143128 GCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCC 53143069 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||||||||| || || |||||||||||| |||||||| ||| ||||| || Sbjct 53143068 CTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTC 53143012 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || ||||| || || ||||| | ||||| Sbjct 53143011 CAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53142967 Score = 145 bits (160), Expect = 2e-29 Identities = 168/225 (75%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| |||||||||||||| || || ||||| || | || || Sbjct 53142732 TCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGT 53142673 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| ||||| || || || ||||| || | || |||||||| || ||||| Sbjct 53142672 GCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCC 53142613 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||||||||| || || |||||||||||| |||||||| ||| ||||| || Sbjct 53142612 CTCTTTGTCTTGGATCTTGCCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTC 53142556 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | || || || ||||| || || ||||| | ||||| Sbjct 53142555 CAGGGTGATGGTTTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53142511 Score = 145 bits (160), Expect = 2e-29 Identities = 168/225 (75%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| ||||||||||| || || || ||||| || | || || Sbjct 53142960 TCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 53142901 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| ||||| || || || ||||| || | || |||||||| || ||||| Sbjct 53142900 GCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCC 53142841 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||||||||| || || |||||||||||| |||||||| ||| ||||| || Sbjct 53142840 CTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTC 53142784 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || ||||| || || ||||| | ||||| Sbjct 53142783 CAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53142739 Score = 145 bits (160), Expect = 2e-29 Identities = 160/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| |||||||||||||| || || ||||| || | || || | ||||||||| Sbjct 53143403 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 53143344 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| || | || |||||||| || ||||| ||||||||||| Sbjct 53143343 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 53143284 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||||||||| |||||||| ||| ||||| || || || | ||| Sbjct 53143283 ATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGAGTGATGGTC 53143227 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| || || ||||| | ||||| Sbjct 53143226 TTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53143195 Score = 134 bits (148), Expect = 3e-26 Identities = 159/214 (74%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | |||||| | || ||||| Sbjct 55051474 ACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCGTCTTCC 55051415 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || | ||| || | || ||||| || ||||||||||| || || || Sbjct 55051414 AGCTGCTTGCCGGCAAGGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 55051355 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| |||||||| |||||||| ||| ||||| || ||||| | ||| Sbjct 55051354 ATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 55051298 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || |||| ||||| ||||| | ||||||| Sbjct 55051297 TTGCCGGTCAGGGTTTTCACGAAGATCTGCATTT 55051264 Score = 98.7 bits (108), Expect = 2e-15 Identities = 119/161 (74%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| ||| ||||| |||||||||||||| |||||||| | || || | | ||| | Sbjct 41695932 AGTCGCAACACAAGATGAAGAGTGGACTCCTTTTGAAT-GTATAGTCAGACAAAGTACAT 41695874 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||||| || ||| | || || ||||| |||| || ||||| |||||||| ||||| Sbjct 41695873 CCATCTTTCAGTTGCCTCCCAGCAAAGATCAGTCTTTTCTGGTCAGGAGGAATTCCTTCC 41695814 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083 || || || | || ||| || || || ||||| ||||| Sbjct 41695813 TTATCCTGGACCTTGACCTTTACATTTTCTATGGTATCCGA 41695773 >seq19 Length=64057457 Score = 143 bits (158), Expect = 6e-29 Identities = 161/214 (75%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | |||||| | |||||||| Sbjct 33854637 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 33854696 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || ||||||||||| || || || Sbjct 33854697 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 33854756 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| |||||||| |||||||| ||| ||||| || ||||| | ||| Sbjct 33854757 ATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 33854813 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || |||| ||||| ||||| | ||||||| Sbjct 33854814 TTGCCGGTCAGGGTTTTCACGAAGATCTGCATTT 33854847 Score = 140 bits (154), Expect = 7e-28 Identities = 159/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | |||||| | |||||||| Sbjct 33853953 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 33854012 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || ||||||||||| || || || Sbjct 33854013 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 33854072 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| |||||||| |||||||| ||| |||||||| ||||| | ||| Sbjct 33854073 ATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCCACTTCCAGGGTGATGGTC 33854129 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 33854130 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 33854161 Score = 136 bits (150), Expect = 9e-27 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | |||||| | |||||||| Sbjct 33854181 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 33854240 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || ||||||||||| || || || Sbjct 33854241 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 33854300 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| |||||||| |||||||| ||| ||||| || ||||| | ||| Sbjct 33854301 ATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 33854357 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 33854358 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 33854389 >seq3 Length=121430405 Score = 105 bits (116), Expect = 1e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||| | || || |||||||||||||| |||||||| ||||| || | | ||| Sbjct 20116397 AGTCTCCACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGT 20116338 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||||| || ||||| || || ||||| |||| ||| ||||| |||||||| | ||| Sbjct 20116337 CCATCTTTCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCTTTCC 20116278 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || | || || || ||| || || || || || || || || || || || || Sbjct 20116277 TTATTCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCGACCTCGAGAGTG 20116218 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | | || ||| ||| ||| || ||||| | ||||| Sbjct 20116217 ATGATGTTCCCTATCAGAGTCTTCACGAAAATCTGCAT 20116180 >seq18 Length=66004023 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/140 (76%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| |||||||||||| | | || ||||| || | || || | ||||||||| ||||| Sbjct 4961342 GTGCAGAGTGGACTCTCT--GGATGTTGTATTCAGACAGGGTGCACCCATCTTC-AGCTG 4961286 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||||| ||| | || | || |||||| | || ||||| |||||||||||||| || Sbjct 4961285 TTTCCCTGCAAAGGTCAGCCTCTGCTGGTCTAGGGGGATGCCCTCTTTGTCTTGAATCTT 4961226 Query 195057 TTGCTTGACGTTCTCAATGG 195076 |||||| ||||| |||| Sbjct 4961225 GGCCTTGACATTCTCGATGG 4961206 >seq12 Length=91163125 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | |||||| |||||||| Sbjct 5439568 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGTGGCCATCTTCC 5439627 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || ||||| |||||||||||||| || || || Sbjct 5439628 AGCTGCTTGCCGGCAAAGATGAGCTTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGG 5439687 Query 195052 ATTTT 195056 || || Sbjct 5439688 ATCTT 5439692 >seq2 Length=137060424 Score = 91.5 bits (100), Expect = 3e-13 Identities = 127/177 (72%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||||||||| || |||||||| || | ||||| | |||| || ||||| Sbjct 96821091 GTGCAGGGTGGACTCTTTCTGGATATTGTATTCTGACAGAGTGCAGCCATTCTCCAGCTG 96821032 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 | || | || || || | |||||||| || || ||||| || |||||||| ||| | Sbjct 96821031 TGTGCCCACAAAAATCAGATGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCTTGGATTAT 96820972 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||||| |||||| ||||||| ||| | |||||||||| ||||| || Sbjct 96820971 AGCTTTGACATTCTCAGTGGTGTC---ACTGGGC---TCAAGGGTAATGGTCTTGCC 96820921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109436907307448