Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq6 183 2e-40 seq23 172 4e-37 seq15 125 6e-23 seq8 107 2e-17 seq11 100 2e-15 seq3 87.8 1e-11 >seq6 Length=119458736 Score = 183 bits (202), Expect = 2e-40 Identities = 369/537 (69%), Gaps = 8/537 (1%) Strand=Plus/Plus Query 550049 AAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTT-TCTTT 550107 || || ||||| |||||||||||||| || | | |||| || ||| ||||| ||||| Sbjct 88642418 AAGGTGGAAATAATTGCCAATGATCAGGGGA-CTGAACCACCCCAAGCTATGTCATCTTT 88642476 Query 550108 CACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTAC 550167 || | || || || |||||||||| ||||| | |||| | | ||||| || Sbjct 88642477 -ACTAACACCAGACGATTGATTGGTGATGCTGCAAAGAACCAAGTCGCAATGAATCCCAC 88642535 Query 550168 CAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCA 550227 ||| || |||||||||| |||| | | |||| |||| ||| ||||| | ||| || Sbjct 88642536 CAACACGGTTTTTGATGCCAAACAACTTACTGGATGAAGATTTGATGATGCTGTTGTCCA 88642595 Query 550228 GGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGA 550287 | | | |||||| |||||||| ||| | | |||| | |||| | |||| | || | Sbjct 88642596 GTCTGTTATGAAACATTGGCCCTTCATGGTGGCAAATGATGCTGGCAGACCTAAGGTTTA 88642655 Query 550288 AGCTACTCATGAAGGATCTGTTAAACAATTTTCA-CCAGAACAAATTTCATCTATGGTTT 550346 || || |||| | ||| | |||| | ||||| | || ||||| ||||| Sbjct 88642656 AG-TAGAATACAAGGGAGAGACAAAGAGTTTTTATCCAGAGGAGATGTCATCCATGGTCC 88642714 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCAGTA 550405 | | || | |||| ||| || | | |||| |||| ||||| |||| || Sbjct 88642715 TGAA-AAGAGGAAAGAAATTGCAGAAGTCTGCCTTGGG-AAGACTGTTACCAATGCTGTT 88642772 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 | || ||||| || || ||||||||||| || ||||| ||||| ||||||||| || | Sbjct 88642773 GTCACAGTACCTGCCTACTTTAATGACTCTCAGCGTCAGGCTACCAAAGATGCTAGAACT 88642832 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 |||||||| || ||| ||| | || |||| |||||| ||||||||||| |||| ||| Sbjct 88642833 ATTGCTGGTCTCCGTGTACTTAGAATCATCAGTGAACCAACTGCTGCTGCTATTGCCTAT 88642892 Query 550526 GGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGGT 550582 || | || ||| || || ||| ||||| || |||||||||| || ||| Sbjct 88642893 GGCTTAGACAAAAATGTTGGAGCAGAGAGAAATGTGCTGATCTTTGATTTAGGTGGT 88642949 >seq23 Length=52530062 Score = 172 bits (190), Expect = 4e-37 Identities = 377/555 (68%), Gaps = 16/555 (3%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||||| || || || | || ||||| || ||||| || || | ||| | || || Sbjct 27336079 AGCTATCGGCATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTCCAACACGGCAA 27336138 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || || || || ||||| || || || ||| | || || || || || | ||||| Sbjct 27336139 GGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCCAGCTACGTGGCCTTCAC 27336198 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTAC 550167 || ||||| | | | || |||||||| || | || ||||| || ||||| Sbjct 27336199 TGATACTGAGCGGCTCATCGGCGATGCAGCCAAGAACCAGGTAGCCA-TG--AATCCCCA 27336255 Query 550168 CAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCA 550227 || ||| | |||||||| |||||| | || || |||| ||||||||| | || || Sbjct 27336256 GAACACTGTCTTTGATGCCAAACGTCTGATAGGCAGAAAATTTAATGATCCTGTCGTGCA 27336315 Query 550228 GGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTA--TATT 550285 |||||||||| | ||||||||||||| | | |||| || || || | || | Sbjct 27336316 ATCAGATATGAAACTTTGGCCTTTCCAAGTAATCAATGAAGGAGGCAAGCCCAAGGTAAT 27336375 Query 550286 GAAG--CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGG 550343 | | |||| | | ||| | ||| |||| || ||| |||| || ||||||| Sbjct 27336376 GGTGTCCTACAAAGG--GGAAAAG--AAAGCTTTTTATCCTGAAGAAATCTCTTCTATGG 27336431 Query 550344 TTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCA 550402 | ||| || ||||| | || || |||||| |||| | | | || || |||| Sbjct 27336432 TACTAACTAAGATGAAGGAGACTGCTGAGGCTTTT-TTGGGCTACACTGTCACCAATGCT 27336490 Query 550403 GTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGA 550462 || || ||||| ||||| || || |||||||| ||||| || || || || ||||| || Sbjct 27336491 GTGATCACTGTGCCAGCCTACTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCGGGT 27336550 Query 550463 CGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCA 550522 ||| || || || ||||| || | |||||||||||||| ||||||||||| |||| Sbjct 27336551 GTTATCGCAGGTCTCAATGTGCTAAGAATTATCAATGAACCCACTGCTGCTGCCATTGCC 27336610 Query 550523 TATGGACTTGATAAA 550537 ||||| | |||||| Sbjct 27336611 TATGGCTTAGATAAA 27336625 >seq15 Length=85296676 Score = 125 bits (138), Expect = 6e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| | || || | || ||||| || |||||||||||||| || ||||| ||||| Sbjct 34219057 GTTACCAACGCTGTCGTCACAGTACCTGCCTATTTTAATGACTCTCAGCGTCAGGCTACC 34218998 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||||||| || || || ||||| || |||||||| || |||||| Sbjct 34218997 AAAGATGCTGGAACTATTGCTGGTCTCAACGTACTTCGAATCATCAATGAGCCAACTGCT 34218938 Query 550511 GCTGCACTTGCATATGG 550527 ||||| |||| ||||| Sbjct 34218937 GCTGCTATTGCCTATGG 34218921 Score = 102 bits (112), Expect = 7e-16 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||| ||| |||||| ||||| | || | || || || ||| Sbjct 34219891 GGCATTGATCTTGGCACCACCTATTCTTGTGTGGGTGTCTTCCAGCACGGAAAGGTGGAA 34219832 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || |||||||||||||| || ||| |||| || ||| ||||| | || || || || Sbjct 34219831 ATAATTGCCAATGATCAGGGGAACCGAACCACCCCAAGCTATGTCGCCTTTACTGATACC 34219772 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATT 550177 |||| ||| | |||||||||||||| | |||| | | ||||| ||||| || || Sbjct 34219771 GAACGGTTAATCGGTGATGCAGCAAAGAACCAAGTCGCAATGAATCCCACCAACACGGTT 34219712 Query 550178 TTTG 550181 |||| Sbjct 34219711 TTTG 34219708 >seq8 Length=113384836 Score = 107 bits (118), Expect = 2e-17 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 || |||||||| ||| || || || ||||| |||| | ||| | | |||||| Sbjct 107174147 ACTAGATGAAGAGTAGACTCCTTTTGCATGTTGTAGTCAGACAAAGTACATCCATCTTCC 107174088 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385 ||||| || || ||||| || ||||||||||| ||||||||||||||||| ||||| || Sbjct 107174087 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 107174028 Query 563386 ATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTA 563445 || || ||||| || | |||||| | | | | |||||||| | || || Sbjct 107174027 ATCTTGGCCTTTACATTTTCTACTGTATCCGAGGGCTCAACCTCGAGAGTGATGGTCTTC 107173968 Query 563446 CCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || || || |||||||| ||||| Sbjct 107173967 CCCGTCAGGGTCTTCACGAAAATCTGCAT 107173939 >seq11 Length=107310763 Score = 100 bits (110), Expect = 2e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| ||||||| | ||||||||||||||||| ||||| | ||||| || || || Sbjct 96117774 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 96117715 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 |||||||||||| |||||||||||| ||||| | | || |||||||| || Sbjct 96117714 AAAGATGCTGGAACTATTGCTGGACTGAATGTCATGAGGATCATCAATGAGCC 96117662 >seq3 Length=121430405 Score = 87.8 bits (96), Expect = 1e-11 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 || |||||||| || ||| |||| ||| ||||| |||| | ||| | ||||| Sbjct 20116388 ACTAGATGAAGAGTGGACTCCTTTTG--AATGTTGTAGTCAGACAAAGTATGTCCATCTT 20116331 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 ||||| || || ||||| || ||||||||||| ||||||||||||| ||| |||| | Sbjct 20116330 TCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCTTTCCTTATTCT 20116271 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTT 563443 | || || ||||| || |||||||| | | | |||||||| | | | Sbjct 20116270 GGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCGACCTCGAGAGTGATGATGT 20116211 Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || | ||||| || |||||||| ||||| Sbjct 20116210 TCCCTATCAGAGTCTTCACGAAAATCTGCAT 20116180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029129731100560