Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq13 86.0 2e-12 seq30 82.4 2e-11 >seq13 Length=84240350 Score = 86.0 bits (94), Expect = 2e-12 Identities = 187/274 (68%), Gaps = 17/274 (6%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| || ||||| ||| | |||||| | || || || || || | | | Sbjct 34103278 TTCCTTCTGGGTGCTATGGAAGAGTGGCTCCTCGTTCTGGCTTGGCAGCAGAACCCTTCA 34103337 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || ||| ||| | ||| ||||| ||||||||||| | | Sbjct 34103338 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGGAATGTTGGTGTTGTCCTGT 34103397 Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTT 1137 |||||||| || | || ||| | |||| | | | | ||||| ||| | |||| Sbjct 34103398 TTAATTTTGGCAAAGAGAAGTTT--GAAGTCAAAA---GTTTGAATTGCACAGCTCATTT 34103452 Query 1138 GTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATTCGG 1191 ||| || || | |||| | ||| |||||| ||| ||| ||||| || | | Sbjct 34103453 GTG-AACGGATATTTT---ACCCA--GAAATAGAGGAAGTTCAAGTTTTAGATGACACTG 34103506 Query 1192 AAAGGGGTTCTGCAGGATTTGGGTCTACCGGAAG 1225 |||||||||| ||| ||||| || || ||||| Sbjct 34103507 AAAGGGGTTCAAGAGGCTTTGGTTCCACTGGAAG 34103540 >seq30 Length=148823899 Score = 82.4 bits (90), Expect = 2e-11 Identities = 185/274 (68%), Gaps = 12/274 (4%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| || ||||| ||| | |||||| | || || || || || || | | Sbjct 142679350 TTCCTTCTGGGTGCTATGGAAGAGTGGCTCCTCGTTCTGGCTTGGCAGCAAAACACTTCA 142679409 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 ||||| || |||||||| || ||| ||| | ||| || || ||||||||||| | | Sbjct 142679410 AAGATGTAGGAGCTGGTGTAATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTCCTGT 142679469 Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTT 1137 ||||| || || | || ||| | | || |||||| ||||| ||| | ||| Sbjct 142679470 TTAATCTTGGCAAAGAGAAGTTTGAAGTCAAAAAGGGTGATCAAATTGCACAGCTCATTC 142679529 Query 1138 GTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATTCGG 1191 ||| || || | | || | ||| |||||| ||| ||| ||||| || | | Sbjct 142679530 GTG-AACGGATATCTT---ACCCA--GAAATAGAGGAAGTTCAAGTTTTAGATGACACTG 142679583 Query 1192 AAAGGGGTTCTGCAGGATTTGGGTCTACCGGAAG 1225 |||||||||| | ||| ||||| || || ||||| Sbjct 142679584 AAAGGGGTTCAGGAGGCTTTGGTTCCACTGGAAG 142679617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138676422322464