Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_019711.1 Length=47288 Score E Sequences producing significant alignments: (Bits) Value seq26 111 5e-20 seq9 98.7 3e-16 >seq26 Length=51681464 Score = 111 bits (122), Expect = 5e-20 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 6818 GACGCACAGCGCGAAGGCATTAACGCCTCTGCCCGTTACCCGAAAAACTGGGTGACCACC 6877 || || |||| |||| | | |||||| | | | ||||||||||| ||| || | Sbjct 16883927 GATGCCCAGCTCGAATGTTTCAACGCCACGACACCCTACCCGAAAAAATGGTTGTTGCCG 16883868 Query 6878 GGCGATCCGGCGCGTGAGTTCACCATGATTCAGTCAGCACCGCTGATGCTGCTGGCTGAC 6937 || ||||||||||| || ||||||||||||| ||||| || |||||||||||| || || Sbjct 16883867 GGGGATCCGGCGCGCGATCTCACCATGATTCATTCAGCTCCCCTGATGCTGCTGCCTCAC 16883808 Query 6938 CCTGATGAGTTCGTGTCCGTACAACTGGCGTAAT 6971 ||||| | ||||| ||||| | ||||| |||| Sbjct 16883807 CCTGACGCATTCGTCTCCGTCCCCCTGGCCTAAT 16883774 >seq9 Length=105708250 Score = 98.7 bits (108), Expect = 3e-16 Identities = 79/94 (84%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 6878 GGCG-ATCCGGCGCGTGAGTTCACCATGATTCAGTCAGCACCGCTGATGCTGCTGGCTGA 6936 |||| ||||||| || || |||||||||||||| ||||| ||||||||||||||| | || Sbjct 98065333 GGCGCATCCGGCACGCGAATTCACCATGATTCAATCAGCTCCGCTGATGCTGCTGCCAGA 98065392 Query 6937 CCCTGATGAGTTCGTGTCCGTACAACTGGCGTAA 6970 |||||| | ||||| ||||| ||||||| ||| Sbjct 98065393 CCCTGACGCATTCGTCTCCGTCAAACTGGCATAA 98065426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151194354948000